PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229095.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 319aa    MW: 35704.5 Da    PI: 9.9619
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229095.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.51.1e-1529121186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Liea  e++ +l+rg+l++++Weev++++            +r+ +qCk++ + l+k+yk +k++ ++ + + +s +p+f+ l+
  XP_008229095.1  29 CWSEDATFTLIEAWGERHLSLNRGNLRQKHWEEVADAVnashvtaDNPRSRRTDVQCKNRVDTLKKKYKIEKARVSDSNGDYTSPWPFFSLLD 121
                     7*************************************99999966666789************************99999999*****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2427123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDFVAGSPSP VTAPRPPSKT ASVPVCEDCW SEDATFTLIE AWGERHLSLN RGNLRQKHWE  60
EVADAVNASH VTADNPRSRR TDVQCKNRVD TLKKKYKIEK ARVSDSNGDY TSPWPFFSLL  120
DSLIGSKFPK PSPPLPRRSP PSPPLQWTFP VARRSATVKR PAPAFFPAPG DEPVLSQKLD  180
FSAFAAVAAA AAAESEESEG SPSRSSVGGS RMRDRDREVG CVELAMAIER FAEIYERVEQ  240
RKQRQMVELE KQRMQFAKDL EYHRMQLFME TTKHQLRKIK RAKRSSSSPG FMSQILMFHS  300
ANGDTRIDQL VLSTLVGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2139381e-114AF213938.1 Prunus dulcis proline-rich protein (PRP) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229095.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X3
TrEMBLA0A251PYU11e-177A0A251PYU1_PRUPE; Uncharacterized protein
TrEMBLA0A251PZ271e-177A0A251PZ27_PRUPE; Uncharacterized protein
STRINGXP_008229094.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.14e-67sequence-specific DNA binding transcription factors