PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229094.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 334aa    MW: 37313.4 Da    PI: 10.0648
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229094.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.41.2e-1529121186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Liea  e++ +l+rg+l++++Weev++++            +r+ +qCk++ + l+k+yk +k++ ++ + + +s +p+f+ l+
  XP_008229094.1  29 CWSEDATFTLIEAWGERHLSLNRGNLRQKHWEEVADAVnashvtaDNPRSRRTDVQCKNRVDTLKKKYKIEKARVSDSNGDYTSPWPFFSLLD 121
                     7*************************************99999966666789************************99999999*****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2427123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDFVAGSPSP VTAPRPPSKT ASVPVCEDCW SEDATFTLIE AWGERHLSLN RGNLRQKHWE  60
EVADAVNASH VTADNPRSRR TDVQCKNRVD TLKKKYKIEK ARVSDSNGDY TSPWPFFSLL  120
DSLIGSKFPK PSPPLPRRSP PSPPLQWTFP VARRSATVKR PAPAFFPAPG DEPVLSQKLD  180
FSAFAAVAAA AAAESEESEG SPSRSSVGGS RMRDRDREVG CVELAMAIER FAEIYERVEQ  240
RKQRQMVELE KQRMQFAKDL EYHRMQLFME TTKHQLRKIK RAKRSSSSPG RIDVGAELRK  300
NMPAGFMSQI LMFHSANGDT RIDQLVLSTL VGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2139381e-114AF213938.1 Prunus dulcis proline-rich protein (PRP) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229094.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A251PYU01e-177A0A251PYU0_PRUPE; Uncharacterized protein
TrEMBLA0A251PYY31e-177A0A251PYY3_PRUPE; Uncharacterized protein
STRINGXP_008229094.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-67sequence-specific DNA binding transcription factors