PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008229056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 538aa MW: 58714.2 Da PI: 6.6079 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.5 | 1.3e-27 | 230 | 284 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ XP_008229056.1 230 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 284 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.152 | 227 | 286 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-18 | 228 | 287 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 228 | 287 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-26 | 230 | 284 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-8 | 233 | 282 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MLILSPLRDG HHQLKEEKQL GGGGRDEGEV EGFDFNGGNS VGSAGLDFPE FTGGMGNLLD 60 SIDFDDLFIG IHDGDVLPDL EMDSEILDFS AHRDHGDEYY HNNAKTTSSK VEDQEEEEEE 120 DKDRARAAAD SLTSATTTRN NQNYSSSSNT STTTTSATQD QDRDGGHEEI GSKGDSNSNI 180 NNNISQIRAS QHEQNQLLNQ SSSPKESADQ KLARKSSSTA QSKNSHGKRK VKVDWTPELH 240 RRFVQAVEQL GVDKAVPSRI LELMGIDCLT RHNIASHLQK YRSHRKHLLA REAEAASWTQ 300 RRQMYGAAAV SGGGGGGGGG GGKSSRSDVM MMNSPNWLNA PTMGFPPIPS PTPPPMHHHH 360 HHQMIRPLHV WGHPSMDQSM MHMWPKHLPH NFPSPIPPPP PPAHAWPPPP PPPSDASYWH 420 HPPPHHQRVP NALTPGTPCF PRHLATATQQ RFPAPPVPGI PPHAMYKVDT GIAVPSPQSG 480 PHPLVDFHPS NESIDAAIGD VLSKPWLPLP LGLRPPATDS VMVELQRQGI PKIPPSCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-16 | 227 | 282 | 2 | 57 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008229056.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008229056.1 | 0.0 | PREDICTED: transcription activator GLK1 isoform X1 | ||||
TrEMBL | A0A251PZA3 | 0.0 | A0A251PZA3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229056.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 8e-75 | GBF's pro-rich region-interacting factor 1 |