PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 538aa    MW: 58714.2 Da    PI: 6.6079
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229056.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.51.3e-27230284156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  XP_008229056.1 230 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 284
                     5689*****************.********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.152227286IPR017930Myb domain
SuperFamilySSF466894.48E-18228287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-26228287IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-26230284IPR006447Myb domain, plants
PfamPF002496.2E-8233282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLILSPLRDG HHQLKEEKQL GGGGRDEGEV EGFDFNGGNS VGSAGLDFPE FTGGMGNLLD  60
SIDFDDLFIG IHDGDVLPDL EMDSEILDFS AHRDHGDEYY HNNAKTTSSK VEDQEEEEEE  120
DKDRARAAAD SLTSATTTRN NQNYSSSSNT STTTTSATQD QDRDGGHEEI GSKGDSNSNI  180
NNNISQIRAS QHEQNQLLNQ SSSPKESADQ KLARKSSSTA QSKNSHGKRK VKVDWTPELH  240
RRFVQAVEQL GVDKAVPSRI LELMGIDCLT RHNIASHLQK YRSHRKHLLA REAEAASWTQ  300
RRQMYGAAAV SGGGGGGGGG GGKSSRSDVM MMNSPNWLNA PTMGFPPIPS PTPPPMHHHH  360
HHQMIRPLHV WGHPSMDQSM MHMWPKHLPH NFPSPIPPPP PPAHAWPPPP PPPSDASYWH  420
HPPPHHQRVP NALTPGTPCF PRHLATATQQ RFPAPPVPGI PPHAMYKVDT GIAVPSPQSG  480
PHPLVDFHPS NESIDAAIGD VLSKPWLPLP LGLRPPATDS VMVELQRQGI PKIPPSCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-16227282257ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229056.10.0PREDICTED: transcription activator GLK1 isoform X1
TrEMBLA0A251PZA30.0A0A251PZA3_PRUPE; Uncharacterized protein
STRINGXP_008229056.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.18e-75GBF's pro-rich region-interacting factor 1