PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228947.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 268aa    MW: 29303.5 Da    PI: 5.2203
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228947.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-3076135260
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY  eHnh+k
  XP_008228947.1  76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLLITYACEHNHPK 135
                     69*************************998****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3168136IPR003657WRKY domain
SuperFamilySSF1182901.44E-2573136IPR003657WRKY domain
SMARTSM007741.0E-3575135IPR003657WRKY domain
PROSITE profilePS5081131.74376136IPR003657WRKY domain
PfamPF031062.0E-2577134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDPQFYRISP FGTDPADPDQ PMTSENGPGS PSSGEETKVA TAPSPKKRRG VQKRVVTVPI  60
GDVEGSKSKG EGHPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRVDP  120
TMLLITYACE HNHPKPTTKP HQTSTTTSPN AEPELRAKTV TPNEEELTIF ASQVDLDLSD  180
DSATLLSAFG WFSDVASTAV LESPICAGNS TCADYDVATR LGDEEDEYLF ADLGELPEGS  240
VIFRHKMVES DEQNRRCSLS VVPCCNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2253137680Disease resistance protein RRS1
5w3x_D2e-2253137680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228947.10.0PREDICTED: probable WRKY transcription factor 69
SwissprotQ93WV52e-78WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A251PYL60.0A0A251PYL6_PRUPE; Uncharacterized protein
STRINGXP_008228947.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.23e-66WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]