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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_008228923.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 432aa MW: 49087.8 Da PI: 8.7086 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 93.2 | 2.1e-29 | 110 | 164 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55
prlrWtp+LH +Fv+av++LGG+e+AtPk +l+lm+v gL+++hvkSHLQ +YR+
XP_008228923.1 110 PRLRWTPDLHLAFVHAVDRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQqMYRS 164
8************************************************648997 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 2.4E-27 | 106 | 165 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 11.913 | 106 | 166 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.97E-12 | 108 | 162 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.7E-20 | 110 | 165 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.8E-7 | 111 | 160 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 432 aa Download sequence Send to blast |
MLSGGPKEID RRDMAPDRIE ISDEDDQSSD ASYEIQAKND RLLSSQKCLF FDLNEEASTG 60 DDDQDVSSNE GTQAVGSRTS PEGNLSCNNT SVEGKERTIA VRQYVRSKMP RLRWTPDLHL 120 AFVHAVDRLG GQERATPKLV LQLMNVRGLS IAHVKSHLQQ MYRSKKLDES GQVISQSSRG 180 MRVKDHILEA YRKFNPYRHL RHVDDSGSHF CSPSVLKQQP YDDFNANSSR SISLWGENSR 240 IDNHGSNIRG SHIFHVREAI TRVGPFRPSR FLEEKRWPPC ELIGNHMKGR RHLLSFTWGD 300 INNVPQPDNL VWSAKASTIN QHQPNTRGPK FISSSYEHLT QLEVQKLQCI NGEMFQPKVD 360 PNMKTMRQKT WVPDLQLSLS HDFSNGSVVN DSQESRKDFE SMLSLSLSSS SARQQEQSTT 420 PTSRIRLSVS RT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 3e-17 | 111 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 3e-17 | 111 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 2e-17 | 111 | 166 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-17 | 111 | 166 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-17 | 111 | 166 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-17 | 111 | 166 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 3e-17 | 111 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 3e-17 | 111 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 3e-17 | 111 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 3e-17 | 111 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 3e-17 | 111 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 3e-17 | 111 | 166 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_008228923.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KT893406 | 0.0 | KT893406.1 Prunus persica cultivar Xiaobaitao putative Myb family transcription factor mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008228923.1 | 0.0 | PREDICTED: uncharacterized protein LOC103328312 isoform X1 | ||||
| Refseq | XP_016649195.1 | 0.0 | PREDICTED: uncharacterized protein LOC103328312 isoform X1 | ||||
| Refseq | XP_016649196.1 | 0.0 | PREDICTED: uncharacterized protein LOC103328312 isoform X1 | ||||
| TrEMBL | A0A314ZD53 | 0.0 | A0A314ZD53_PRUYE; Uncharacterized protein | ||||
| STRING | XP_008228923.1 | 0.0 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3012 | 32 | 70 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38300.1 | 9e-37 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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