PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008228768.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 31718.8 Da PI: 9.3044 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 148 | 198 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+++l+g+ XP_008228768.1 148 NYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 198 59*******.**********32....25**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.92E-17 | 147 | 206 | No hit | No description |
Pfam | PF00847 | 4.3E-14 | 148 | 197 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.893 | 148 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-32 | 148 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 148 | 205 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-29 | 148 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 149 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 171 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MATVPFCHNP LTFYAPETFR FLSEANSLYE SFFSKTHFSV SSVSFPNQLN ISNPPCHTNV 60 SAEIPICGVS SKESESQTET PPVLDGIAAV VGQHVLYGSQ RSCNVPTNGE TTQISEFGYC 120 SERIGSAETS KKDADHKKGI GNLSVQKNYR GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT 180 AEEAARAYDA AARRLRGAKA RTNFEIPSVF PLSSPCSSSS SSDAKRVIRG KNNIKGLKSK 240 RKCSVVTCVA HLFSEAPTHL RSQVMEIKEN VELDLKLGVG VSDIGKTSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-18 | 147 | 206 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008228768.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008228768.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | M5WY96 | 0.0 | M5WY96_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228768.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13023 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 6e-20 | ERF family protein |