PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228563.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 531aa MW: 58517.5 Da PI: 6.923

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228563.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	227	268	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L XP_008228563.1 227 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQDL 268 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-7	223	270	No hit	No description
SMART	SM00338	2.8E-7	224	287	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	226	270	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.7E-8	227	269	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	228	270	No hit	No description
PROSITE pattern	PS00036	0	231	246	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.9E-32	309	384	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MAFISATCPD SSFFLEYKDE NGLRKSCMAS HRVGETATGL SESGPSNHHV PYAVLHGMNA 60 PSTSFLNQEG SAFDFGELEE AIARQVRNDE AQAPLFTGRP AATLEMFPSW PMRFHQTPRG 120 SSKSGGESTD SGSQVNTLTS KGEGGQLEPE SPISKKASSS DHQQAFDQKH LQFQQQQQLQ 180 AQDMAISDSS RGGAGAVGAS QSQSAAKPSQ EKRKGAGSTS ENKQLDAKTL RRLAQNREAA 240 RKSRLRKKAY VQQLETSRIK LTQLEQDLQR ARAQGLFLGG CGGGLGNISS GAAIFDMEYA 300 RWLEDDHRHM SELRTGLQAH LSDSDLRVIV DGYISHYDEI FQLKGVAAKS DVFHLITGMW 360 TTPAERCFLW MGGFRPSELI KMLTAQLDPL TEQQFMGIYS LQQSSQQAEE ALTQGLEQLH 420 QSLVDTIAGG PVIDGMQQMA VALGKLTNLE GFVRQADNLR QQTLHQLRRI LTVRQAARCF 480 LVIGEYYGRL RALSSLWASR PRESMISDDN SCQTTTDLQM VQTSQNHFAS F

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MAFISATCPD SSFFLEYKDE NGLRKSCMAS HRVGETATGL SESGPSNHHV PYAVLHGMNA  60
PSTSFLNQEG SAFDFGELEE AIARQVRNDE AQAPLFTGRP AATLEMFPSW PMRFHQTPRG  120
SSKSGGESTD SGSQVNTLTS KGEGGQLEPE SPISKKASSS DHQQAFDQKH LQFQQQQQLQ  180
AQDMAISDSS RGGAGAVGAS QSQSAAKPSQ EKRKGAGSTS ENKQLDAKTL RRLAQNREAA  240
RKSRLRKKAY VQQLETSRIK LTQLEQDLQR ARAQGLFLGG CGGGLGNISS GAAIFDMEYA  300
RWLEDDHRHM SELRTGLQAH LSDSDLRVIV DGYISHYDEI FQLKGVAAKS DVFHLITGMW  360
TTPAERCFLW MGGFRPSELI KMLTAQLDPL TEQQFMGIYS LQQSSQQAEE ALTQGLEQLH  420
QSLVDTIAGG PVIDGMQQMA VALGKLTNLE GFVRQADNLR QQTLHQLRRI LTVRQAARCF  480
LVIGEYYGRL RALSSLWASR PRESMISDDN SCQTTTDLQM VQTSQNHFAS F

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228563.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228563.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A251NPJ6	0.0	A0A251NPJ6_PRUPE; Uncharacterized protein
STRING	XP_008228563.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]