PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228560.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 757aa    MW: 84396.5 Da    PI: 6.2367
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228560.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21104159156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_008228560.1 104 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 159
                     7999************************************************9877 PP
2START234.33.2e-732734962206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     + ++a++el k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++gvv+ ++++lv++++d++ qW+e+++    ka+t+
  XP_008228560.1 273 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYMKEFNIEIPgngrpkRSIEASRETGVVFVDMPRLVQSFMDVN-QWKEMFPcmisKAATV 366
                     56789***********************************9988899*******************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vis+g      ga+qlm+aelq+l+plvp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh 
  XP_008228560.1 367 DVISNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHL 460
                     ************************************************************98.9******************************* PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++++ ++r +v+sgla+ga++wvatlq qce+
  XP_008228560.1 461 ECQKSTIQTMYRTIVNSGLAFGARHWVATLQLQCER 496
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-2390155IPR009057Homeodomain-like
SuperFamilySSF466896.84E-2193162IPR009057Homeodomain-like
PROSITE profilePS5007118.269101161IPR001356Homeobox domain
SMARTSM003891.5E-18103165IPR001356Homeobox domain
PfamPF000461.3E-18104159IPR001356Homeobox domain
CDDcd000867.11E-17108159No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084840.212263499IPR002913START domain
SuperFamilySSF559611.51E-35265496No hitNo description
CDDcd088753.57E-114267495No hitNo description
Gene3DG3DSA:3.30.530.208.6E-6269490IPR023393START-like domain
SMARTSM002343.5E-74272496IPR002913START domain
PfamPF018521.5E-59273496IPR002913START domain
SuperFamilySSF559616.59E-15526745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGQAAAA SREVEEGDEG SGGAGSVRRR  60
EDTAEISSEN SGPARSRSED EFDGEGEHDE DDGDGDNKNK KKKRKKYHRH TTEQIREMEA  120
LFKESPHPDE KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA IQERHENSLL KGEMEKLRDE  180
NKAMREQINK SCCPNCGTAT TSRDASLTTE EQQLRIENAR LKSEVEKLRA ALVKNPPGTS  240
SPSCSSGHDQ ENRSSLDFYT GIFGLEKSRI MEIVNQAMEE LKKMATAGEP LWVRSVETGR  300
EILNYDEYMK EFNIEIPGNG RPKRSIEASR ETGVVFVDMP RLVQSFMDVN QWKEMFPCMI  360
SKAATVDVIS NGEGDNRNGA VQLMFAELQM LTPLVPTREV YFVRCCKQLS AEQWAIVDVS  420
IDKVEDNIDA SLVKCRKRPS GCIIEDKSNG HCKVIWVEHL ECQKSTIQTM YRTIVNSGLA  480
FGARHWVATL QLQCERLVFF MATNVPMKDS TGVATLAGRK SILKLAQRMT WSFCRAIGAS  540
SYHTWTKISS KTGDDIRIAS RKNLNDPGEP LGVILCAVSS VWLPVCPYVL FDFLRDETRR  600
NEWDIMLNGG PAQTIANLSK GQDRGNAVTI QTMKSKENSM WILQDTCINS YESMVVYAPV  660
DITGMQSVMT GCDASNIAIL PSGFSILPDG LESRPMVITS RQEDRSSEGG TLLTAAFQVL  720
TNSSPTAKLT MESVESVNTL ISCTLRNIKT SLQCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104KKKKRK
299105KKKKRKK
3101105KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228560.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLM5WXG00.0M5WXG0_PRUPE; Uncharacterized protein
STRINGXP_008228560.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]