PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228507.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 397aa    MW: 45657.6 Da    PI: 4.3543
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228507.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.97.5e-15163247286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+ +L++a  ++  + ++++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk++    + t +++s+++yf++++
  XP_008228507.1 163 WTEHETFVLLDAWGDRFLQRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERLKFAE-TGGATSKWVYFKKMD 247
                     *************************************762678**********************99998.688999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-21162249No hitNo description
PROSITE profilePS500906.319163220IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-4178228IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDDTEDDARY PPNPYGVNHQ QGYGSSQRQK LPVRSGPYSR PVGSHYVDDE EDDEDEEDEE  60
LGEEEEDNNG QNGYPSVHKD VDDDDDDEDD GDDEEDEEDE DDNKSKVYNR MIDDADLKKH  120
PKKRKLKNLI SSYEFAPRLP APPAAAPSAP RQSIGGRNSL TDWTEHETFV LLDAWGDRFL  180
QRGKKSLRSE EWQEVAEKVS EVSKIERTDT QCRNRLDTLK KKYKKERLKF AETGGATSKW  240
VYFKKMDMLM SSPQQQSGLS CGLDSGEYVF MNPRVYLNRA NGLDEMRDSP GNSESAEGVD  300
DDSDGLPPKK RRYGRDNDDR CSFRLLADSI QKFSDIYEKI ETSKRQQMVE LEKMRMDFHR  360
DLEMQKRQIM ERAQAEIAKI QQGDDEENDI SAENASG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124LKKHPKKRK
2118124KHPKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228507.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228507.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A314YMF90.0A0A314YMF9_PRUYE; Trihelix transcription factor ASIL1-like
STRINGXP_008228507.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-75Trihelix family protein