PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008228265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GeBP | ||||||||
Protein Properties | Length: 398aa MW: 43554.9 Da PI: 7.7011 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 116 | 2.2e-36 | 169 | 263 | 1 | 98 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klfqr+ws++Dei++L+G+id+ +k+g++p++d+ af++f+kks++++v+k+ql +Kirr+KkK++++v+k gk+ + k+h+qk f+lskk+ XP_008228265.1 169 KLFQRIWSDDDEITILKGMIDYSTKKGADPYSDMGAFHDFIKKSLKADVNKTQLQDKIRRIKKKYETNVAK---GKKYNPVKPHEQKLFDLSKKV 260 579********************************************************************...999999*************** PP DUF573 96 Wgs 98 Wgs XP_008228265.1 261 WGS 263 *95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.2E-34 | 171 | 262 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MAPKRPSPLD EPPAASSSDE EVASSEEEVD GEEEEESGSG SESESEEPEP PKAAPTPVAA 60 KKPDSATVNS KPQSSSSGSE SESESDSELD KDRVVKPIVS KPMEETPKTK KPRSKASALT 120 TPAARAGLKR PSESDLKDSK RPKKKVTDPD QEREHAGEEK KAGGDDSKKL FQRIWSDDDE 180 ITILKGMIDY STKKGADPYS DMGAFHDFIK KSLKADVNKT QLQDKIRRIK KKYETNVAKG 240 KKYNPVKPHE QKLFDLSKKV WGSGEGSIGL SGLSEQSKSN GKARTNQKGN KTLASLKAEL 300 LSSPERPKEC EKVEFGLKPS GSESLSEVIG FDKGFRELGL PEGVVKQGLE LIGGAKRAEL 360 KEKWKKLHVA ELELFVKKSE LMRDQAKVIL EALKSSEH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008228265.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008228265.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | M5WQU9 | 0.0 | M5WQU9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228265.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 6e-33 | DNA-binding storekeeper protein-related transcriptional regulator |