PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008228073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 170aa MW: 19491.9 Da PI: 6.1614 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.5 | 4.3e-08 | 60 | 140 | 12 | 88 |
FAR1 12 FsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 F +++ +s + + ++ + t+ C ++g+ +++ k +++ rr+ +++gC +lk k+ + d++w+++ + HnH XP_008228073.1 60 FVIVTLRSDQGGKGNKKPRVTLGCERYGEYRKRIPKkdiKDEDRRHAGYKKCGCPFQLKGKRLEtDDHWMLIVVTGVHNHI 140 7888888888878888999*********988876665678899999999**********999888***************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.5E-6 | 60 | 139 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MDVEEHDFGE KGDEYSGCSN VDFEQIVDCT SEFTTNEISI FNNREELIRW AREVGRANDF 60 VIVTLRSDQG GKGNKKPRVT LGCERYGEYR KRIPKKDIKD EDRRHAGYKK CGCPFQLKGK 120 RLETDDHWML IVVTGVHNHI AAEHLEGHSF AGRLSFEETS LLLDISKSLV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008228073.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008228073.1 | 1e-124 | PREDICTED: uncharacterized protein LOC103327515 | ||||
TrEMBL | M5XIH9 | 2e-93 | M5XIH9_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | XP_008228073.1 | 1e-124 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF180 | 11 | 22 |