PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228028.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 466aa MW: 51018.8 Da PI: 5.7345

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228028.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.6e-33	247	301	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerFveav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl XP_008228028.1 247 RPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKAMNVEGLTIYHVKSHLQKYRL 301 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.435	243	304	IPR017930	Myb domain
SuperFamily	SSF46689	1.45E-17	246	301	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-31	246	302	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-25	248	302	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-9	249	300	IPR001005	SANT/Myb domain
Pfam	PF14379	4.5E-23	337	384	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MKVGLPSTIM SRHDMISVPQ SETTKGVTQS YCTPKSQMHD FLGSESEGRS LAASECSSAR 60 LSPFIRAESL GSPTNIQGSS VQHSQNTFSR SSVFCTSLYQ SSSSSSETSR QLGNLPFLPH 120 PPTYSQSISA VVSKSPFLLS DDMCNQYDDE ESEDLMKDFL NLHGDGSHGS FHGISCGSDT 180 LALTEQLELQ FLSDQLDIAI TDNGKNPGLD EIYEIPQASL KPAIVLTTPP VDALSSHPSP 240 GPSPAHRPRM RWTPELHERF VEAVNKLDGA EKATPKGVLK AMNVEGLTIY HVKSHLQKYR 300 LAKYMPEKRE DKKASSSEER KAASSSSESD GRRKGSIQIT EALRMQMEVQ KQLHEQLEVQ 360 RALQLRIEDH AKYLQKILEE QQKAGSALLS PQALSSLTTN SIQEPEQQPS SSAGVSPTQP 420 AESDSSSPLS LKHKATDSSE SEPPACTKKQ RLEEKPDEGV VENPQQ

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MKVGLPSTIM SRHDMISVPQ SETTKGVTQS YCTPKSQMHD FLGSESEGRS LAASECSSAR  60
LSPFIRAESL GSPTNIQGSS VQHSQNTFSR SSVFCTSLYQ SSSSSSETSR QLGNLPFLPH  120
PPTYSQSISA VVSKSPFLLS DDMCNQYDDE ESEDLMKDFL NLHGDGSHGS FHGISCGSDT  180
LALTEQLELQ FLSDQLDIAI TDNGKNPGLD EIYEIPQASL KPAIVLTTPP VDALSSHPSP  240
GPSPAHRPRM RWTPELHERF VEAVNKLDGA EKATPKGVLK AMNVEGLTIY HVKSHLQKYR  300
LAKYMPEKRE DKKASSSEER KAASSSSESD GRRKGSIQIT EALRMQMEVQ KQLHEQLEVQ  360
RALQLRIEDH AKYLQKILEE QQKAGSALLS PQALSSLTTN SIQEPEQQPS SSAGVSPTQP  420
AESDSSSPLS LKHKATDSSE SEPPACTKKQ RLEEKPDEGV VENPQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-26	247	304	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-26	247	304	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-26	247	304	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-26	247	304	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-26	247	304	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-26	247	304	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-26	247	304	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-26	247	304	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228028.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228026.1	0.0	PREDICTED: protein PHR1-LIKE 1
Refseq	XP_008228027.1	0.0	PREDICTED: protein PHR1-LIKE 1
Refseq	XP_008228028.1	0.0	PREDICTED: protein PHR1-LIKE 1
Swissprot	Q949U2	1e-136	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	M5X4S6	0.0	M5X4S6_PRUPE; Uncharacterized protein
STRING	XP_008228026.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-109	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]