PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008228026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 466aa MW: 51018.8 Da PI: 5.7345 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.6e-33 | 247 | 301 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerFveav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl XP_008228026.1 247 RPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKAMNVEGLTIYHVKSHLQKYRL 301 59****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.435 | 243 | 304 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.45E-17 | 246 | 301 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-31 | 246 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-25 | 248 | 302 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-9 | 249 | 300 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.5E-23 | 337 | 384 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MKVGLPSTIM SRHDMISVPQ SETTKGVTQS YCTPKSQMHD FLGSESEGRS LAASECSSAR 60 LSPFIRAESL GSPTNIQGSS VQHSQNTFSR SSVFCTSLYQ SSSSSSETSR QLGNLPFLPH 120 PPTYSQSISA VVSKSPFLLS DDMCNQYDDE ESEDLMKDFL NLHGDGSHGS FHGISCGSDT 180 LALTEQLELQ FLSDQLDIAI TDNGKNPGLD EIYEIPQASL KPAIVLTTPP VDALSSHPSP 240 GPSPAHRPRM RWTPELHERF VEAVNKLDGA EKATPKGVLK AMNVEGLTIY HVKSHLQKYR 300 LAKYMPEKRE DKKASSSEER KAASSSSESD GRRKGSIQIT EALRMQMEVQ KQLHEQLEVQ 360 RALQLRIEDH AKYLQKILEE QQKAGSALLS PQALSSLTTN SIQEPEQQPS SSAGVSPTQP 420 AESDSSSPLS LKHKATDSSE SEPPACTKKQ RLEEKPDEGV VENPQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-26 | 247 | 304 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-26 | 247 | 304 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-26 | 247 | 304 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-26 | 247 | 304 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-26 | 247 | 304 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-26 | 247 | 304 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-26 | 247 | 304 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-26 | 247 | 304 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008228026.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008228026.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 | ||||
Refseq | XP_008228027.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 | ||||
Refseq | XP_008228028.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 | ||||
Swissprot | Q949U2 | 1e-136 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | M5X4S6 | 0.0 | M5X4S6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228026.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13469 | 19 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-109 | G2-like family protein |
Publications ? help Back to Top | |||
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