PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227952.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 287aa    MW: 31574.2 Da    PI: 6.4419
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227952.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15220256135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg  +  Tp++Rrgpdg++tLCnaCGl+++ kg+
  XP_008227952.1 220 CRHCGINEkcTPMMRRGPDGPRTLCNACGLMWANKGT 256
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.5E-1176111IPR010399Tify domain
PROSITE profilePS5132013.65476111IPR010399Tify domain
PfamPF062004.5E-1180110IPR010399Tify domain
PfamPF062032.5E-15144186IPR010402CCT domain
PROSITE profilePS5101713.225144186IPR010402CCT domain
SMARTSM004014.5E-14214267IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.84214270IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-12215265No hitNo description
Gene3DG3DSA:3.30.50.104.7E-14219261IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.39E-14219269No hitNo description
PROSITE patternPS003440220247IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13220256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDDICGSDEP MHMNDNLHLQ YMQEHEHHHG LDHISNVNGV ADDHDNGSGG AELVQADVPS  60
DPMNLSDTHD GMMDHGTENG DQLTLSFQGQ VFVFDCVSPE KVQAVLLLLG AREVPPSMPA  120
VPVTTQHTNR ALTGTPQRLT VPQRLASLIR FREKRKERNF DKKIRYTVRK EVALRMQRKK  180
GQFTSSKPNN DDSASAVTSS GSNESWSQDG NGSQHQEAAC RHCGINEKCT PMMRRGPDGP  240
RTLCNACGLM WANKGTLRDL SKAAEPAAPQ AGQNPSISKN EDMKPDL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227952.10.0PREDICTED: GATA transcription factor 24
RefseqXP_016649111.10.0PREDICTED: GATA transcription factor 24
SwissprotQ8H1G01e-119GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A251PTT00.0A0A251PTT0_PRUPE; Uncharacterized protein
STRINGXP_008227952.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-123ZIM-like 1