PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227774.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 616aa    MW: 66992.9 Da    PI: 6.9054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227774.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.2e-30324382259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r aed++++++tYeg+H h+
  XP_008227774.1 324 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRLAEDKTILVTTYEGNHSHP 382
                     7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-31308384IPR003657WRKY domain
SuperFamilySSF1182908.37E-27316384IPR003657WRKY domain
PROSITE profilePS5081128.897318384IPR003657WRKY domain
SMARTSM007744.6E-35323383IPR003657WRKY domain
PfamPF031068.1E-26325382IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MEKQGRRHHI IPKLFPHSVS DCSFNASDDG LVDATNNTSS SNPSIPIPIP IPIKQLFRQP  60
KEIKVMDFFS DNNIMNDDAD DDEEPRRQPQ QDCNNNPPAV NTGLNLLTLN SGISSTSASD  120
IHQNSNNKLM TSLQVELERL HEENGELKTM LDQMTKSYSQ LQAQLLMAMQ KQAQNRLREP  180
IKCEANGMLA RQFMDPRPST AAAMDHVRDP SVAYSSGKTP ADHEAFSSFA PSNLNIEVMS  240
MERDQYQRRL QTNINCAEEA LDRSSQCPGS PNYTSKSSDP NLFDDDNDEP KRSTDQEQVP  300
VADQIPFRKA RVSVRARSEA PMISDGCQWR KYGQKMAKGN PCPRAYYRCT MAIGCPVRKQ  360
VQRLAEDKTI LVTTYEGNHS HPLPPAATAM AKTTSAAAAM LLSGSTTSKE AHQYHHHHLA  420
NSGFFSNSQL PFFTSSMATL SASAPFPTIT LDLTQSPMQQ FHRIPPPSSS TFPLPLHGYH  480
QLMGGLGHPI QAPMYFPPNY KAPPPPAGVP LGGQRSTSTH DSGMIETVGA AIASDPNFTA  540
ALAAAISTIM GAPRPHQGHQ GGININDGDI ANNNAARGVV ASTNHSPPSA NIGVPPGSLQ  600
PGSPQLPQSC TTFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20310386176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227774.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227774.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A251PT050.0A0A251PT05_PRUPE; Uncharacterized protein
STRINGXP_008227774.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-59WRKY family protein