PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227448.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 540aa    MW: 60557.4 Da    PI: 5.9235
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227448.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.87e-1301715402374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L++cA+a++++dl  a++l++ l +++s +g+p+qRl ay++e+L+arl rs+s++yk+l+++  +    +e +++++++++++P+ +f+++
  XP_008227448.1 171 KDVLIHCAHAIAEDDLPTANSLMEVLGQMVSVSGEPIQRLGAYMLEGLRARLERSGSSIYKTLKCEVPT---GAELMSYMSVLFQICPYWRFAYM 262
                     789*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN  I ea+e+e r+HiiDf+i qG QW++L+q La +p+gpp++RiTgv++++s   +   l+ +g+rL+++A++ +vpfefn  +a +  ++
  XP_008227448.1 263 SANVVIREALENEPRIHIIDFQIAQGSQWVPLIQDLARQPGGPPHIRITGVDDSQSAhaRGGGLHIVGQRLSQIANSWNVPFEFNN-AAMSGCEV 356
                     *****************************************************9988889999***********************.89999*** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ele+Lr++pgEa+aVn+ + lh+++desvs++++rd++L+lvkslsPkv+++veqe+++n+++F+ rf+e ++yy+a+f+s+++  pr++++ri+
  XP_008227448.1 357 ELENLRIQPGEAIAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVMTLVEQESNTNTSPFFSRFVEMVDYYTAMFESIDVARPRDDKQRIS 451
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E ++++r+ivn+vacegaer+erhe l+kW++rl++  F+p+pls k+++ +++ll++++++ yr++e +g+l+l+Wk+r+Lv+ SaWr
  XP_008227448.1 452 AEMHCVARDIVNMVACEGAERVERHELLGKWKSRLTMDEFTPYPLSPKVTEAIRSLLKEFNGN-YRLQEANGALYLCWKQRALVTSSAWR 540
                     *************************************************************77.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.866144521IPR005202Transcription factor GRAS
PfamPF035142.4E-127171540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MQTSQKHRST ASIHRLYHHQ PMQDIDPSIF QILENSVCSD TGSQGNNVSF QTYKEEYFTL  60
ESSPATTGFV ACDSPSAVSG LSNRSPFSSQ GSQSCLSDQH HSPDNTSGSP ISGCSVADDG  120
NGLRYKLREL EISLLGPESD IIVDSHYCCY KSDMPRWNRN EIAEMPNLNL KDVLIHCAHA  180
IAEDDLPTAN SLMEVLGQMV SVSGEPIQRL GAYMLEGLRA RLERSGSSIY KTLKCEVPTG  240
AELMSYMSVL FQICPYWRFA YMSANVVIRE ALENEPRIHI IDFQIAQGSQ WVPLIQDLAR  300
QPGGPPHIRI TGVDDSQSAH ARGGGLHIVG QRLSQIANSW NVPFEFNNAA MSGCEVELEN  360
LRIQPGEAIA VNFPYVLHHM PDESVSTQNH RDRLLRLVKS LSPKVMTLVE QESNTNTSPF  420
FSRFVEMVDY YTAMFESIDV ARPRDDKQRI SAEMHCVARD IVNMVACEGA ERVERHELLG  480
KWKSRLTMDE FTPYPLSPKV TEAIRSLLKE FNGNYRLQEA NGALYLCWKQ RALVTSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5617653925378Protein SCARECROW
5b3h_A2e-5617653924377Protein SCARECROW
5b3h_D2e-5617653924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227448.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227448.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLM5X1000.0M5X100_PRUPE; Uncharacterized protein
STRINGXP_008227448.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13