PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008227414.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YB

Protein Properties

Length: 230aa MW: 25917.5 Da PI: 6.7405

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008227414.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.4	3.2e-56	43	138	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk+yl+kyrelege XP_008227414.1 43 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVHPLKLYLQKYRELEGE 137 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_008227414.1 138 K 138 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.9E-55	36	168	IPR009072	Histone-fold
SuperFamily	SSF47113	9.25E-41	45	161	IPR009072	Histone-fold
Pfam	PF00808	2.3E-28	48	112	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.0E-20	76	94	No hit	No description
PROSITE pattern	PS00685	0	79	95	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.0E-20	95	113	No hit	No description
PRINTS	PR00615	2.0E-20	114	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEDERLNGPS GGSPENPCGV KSSASSNNNS GNSNYNNNNN SNKEQDRFLP IANVGRIMKK 60 VIPGNGKISK DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGEDIIW AITTLGFEDY 120 VHPLKLYLQK YRELEGEKLN VPKQQRLEQR QLQQHQQNHH HQQPEQQEQH TLVSAYDNSV 180 YSSTNLLSQP SFIAAAAADH HQTAFSLPFS PTSIQKQLHP QDHIDSVGHW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-46	41	133	1	93	NF-YB
4awl_B	2e-46	41	133	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-46	41	133	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008227414.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008227414.1	1e-173	PREDICTED: nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	2e-73	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	M5X220	1e-169	M5X220_PRUPE; Uncharacterized protein
STRING	XP_008227414.1	1e-172	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	4e-65	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]