PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008227106.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 538aa MW: 59473.1 Da PI: 5.0014

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008227106.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	441.9	4.6e-135	168	538	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+e+L +cA+a++++d++ ++ l+++l++++s +g+p+qRl ay++e+L arla+s+s++y+al+++e + s+e l+++++++e++P++kf++ XP_008227106.1 168 LKEVLCACAKALANSDMSTTELLISNLRQMVSVSGEPIQRLGAYILEGLVARLASSGSSIYAALRCKEPA---SAELLSYMHILYEICPYFKFGY 259 5789***************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s+ + l +g+rL+++Ae+++vpfef++ + + ++ XP_008227106.1 260 MSANGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALAARPGGPPQIRITGIDDSTSSyaRGGGLGLVGQRLSRLAESCKVPFEFHA-AGISASE 353 **************************************************998899999********************.7889* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+++v+pgEa+aVn++++lh+++desvs +++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+y+ a+fds+++ lpre++eri XP_008227106.1 354 VQLEDIEVRPGEAIAVNFAFMLHHMPDESVSCQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLPRFAETLNYFRAIFDSIDVALPREHKERI 448 ********************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+reivn++aceg er+er e l+kW++r+ +aGF+p+pls+ ++ ++k+ll+ ++++ y++ee++g+l+lgW+++ Lv+ +aWr XP_008227106.1 449 NVEQHCLAREIVNIIACEGMERVERYELLSKWKSRFIMAGFSPYPLSSLVNGTIKTLLQSYSEK-YTLEERDGALYLGWMNQVLVASCAWR 538 **********************************************************65.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.26	142	519	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-132	168	538	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MQESQKHIIP NVSHGCGEQP VEEPESYSWP PIHSVDHQAS SDEFIQGTQL SVQHLAQYCT 60 HESSSGTSTY HPVHSSPSSI GFSANGSPTS HPDLQNYQSC GSPVNQSCLS NDTDDLGHKM 120 RELESVLLGN DLDALDMYAI TDELGPNQLS SEAENREQMM EMISRGDLKE VLCACAKALA 180 NSDMSTTELL ISNLRQMVSV SGEPIQRLGA YILEGLVARL ASSGSSIYAA LRCKEPASAE 240 LLSYMHILYE ICPYFKFGYM SANGAIAEAM KDESRVHIID FQVAQGSQWI TLIQALAARP 300 GGPPQIRITG IDDSTSSYAR GGGLGLVGQR LSRLAESCKV PFEFHAAGIS ASEVQLEDIE 360 VRPGEAIAVN FAFMLHHMPD ESVSCQNHRD RLLRLVKSLS PKVVTLVEQE SNTNTAPFLP 420 RFAETLNYFR AIFDSIDVAL PREHKERINV EQHCLAREIV NIIACEGMER VERYELLSKW 480 KSRFIMAGFS PYPLSSLVNG TIKTLLQSYS EKYTLEERDG ALYLGWMNQV LVASCAWR

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MQESQKHIIP NVSHGCGEQP VEEPESYSWP PIHSVDHQAS SDEFIQGTQL SVQHLAQYCT  60
HESSSGTSTY HPVHSSPSSI GFSANGSPTS HPDLQNYQSC GSPVNQSCLS NDTDDLGHKM  120
RELESVLLGN DLDALDMYAI TDELGPNQLS SEAENREQMM EMISRGDLKE VLCACAKALA  180
NSDMSTTELL ISNLRQMVSV SGEPIQRLGA YILEGLVARL ASSGSSIYAA LRCKEPASAE  240
LLSYMHILYE ICPYFKFGYM SANGAIAEAM KDESRVHIID FQVAQGSQWI TLIQALAARP  300
GGPPQIRITG IDDSTSSYAR GGGLGLVGQR LSRLAESCKV PFEFHAAGIS ASEVQLEDIE  360
VRPGEAIAVN FAFMLHHMPD ESVSCQNHRD RLLRLVKSLS PKVVTLVEQE SNTNTAPFLP  420
RFAETLNYFR AIFDSIDVAL PREHKERINV EQHCLAREIV NIIACEGMER VERYELLSKW  480
KSRFIMAGFS PYPLSSLVNG TIKTLLQSYS EKYTLEERDG ALYLGWMNQV LVASCAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-64	172	538	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008227106.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008227106.1	0.0	PREDICTED: scarecrow-like protein 21 isoform X1
Refseq	XP_008227107.1	0.0	PREDICTED: scarecrow-like protein 21 isoform X1
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A251PQ12	0.0	A0A251PQ12_PRUPE; Uncharacterized protein
STRING	XP_008227106.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1653	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]