PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226756.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 453aa    MW: 49728.9 Da    PI: 6.5137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226756.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-063433811154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_008226756.1 343 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 381
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.894332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-7342385No hitNo description
SuperFamilySSF474595.37E-12342398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0036343387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9346389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MADEFQTTGN WWDSSARTRF ETGTSPPAST LNSLGSFGWQ PDMVDLKARS SMDSGSVSGT  60
SSMVFHSVHK LEEGPDSATG SGGDPSLHMM GLGLSSQATD WNHALFRGEK AETSFRSILQ  120
ENMNSNTNFH QENDQQLQWR DKLFAGGCGD SSNNEFKQMN RGFSLDQTQF SPQYSSGDST  180
VTCQGLPSSF QMDSGAALYG SPSTILQGLL GPHHDNQQPN SAPMNFPYQA NYGVNSSDQL  240
LPSWSKVPQF LRTSPPKQPP QSHLQFSNNA TFWNAPHEAA MKDVRPSFFP SLQQQFPTAR  300
FEEKPKNISE VQESGAVGKK SGSETASKRP RNETSSPLPA FKVRKEKMGD RITALQQLVS  360
PFGKTDTASV LSEAIEYIKF LHEQVNVLST PYMKSGAAIQ HQQNSDQSKD PDQGPKQDLR  420
SRGLCLVPVS STFPVTHGTT VDFWTPTFGG TFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226756.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180541e-46AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085801e-46BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226756.10.0PREDICTED: transcription factor bHLH123
SwissprotQ8GXT34e-87BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A314UY340.0A0A314UY34_PRUYE; Transcription factor bHLH123
STRINGXP_008226756.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]