PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226707.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 370aa    MW: 40813.6 Da    PI: 7.5397
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226707.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.1e-18249347195
                     EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k lt sd++ + +rlv+pkk+ae+h  ++++++++ +t++d +gr W+++++ +++s++   yvl+ G k++   n+ ++gD+v+F++++ +e
  XP_008226707.2 249 FEKSLTASDTFLNtARLVIPKKCAEAHfpKISETQGFPITIQDYTGRDWKFQYRCWQNSNSkkmYVLE-GLKDYMILNQWQVGDTVTFHRTE-QE 341
                     899******998779**************99999*******************885555555548888.********************654.67 PP

                     E..EEE CS
              B3  90 felvvk 95 
                     ++l ++
  XP_008226707.2 342 GKLIIG 347
                     767766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-23240349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-16246342IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-18247346No hitNo description
SMARTSM010192.1E-9249351IPR003340B3 DNA binding domain
PfamPF023622.0E-15249348IPR003340B3 DNA binding domain
PROSITE profilePS5086310.052250352IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSLSFNTFSA SLSRLLSFVL SVLSFSFALS VSLCLICSLS LTLCVASMAS EHCFFCKAEI  60
AEFITGWPLK DGSFAKLCGK CGYAYIHDQF CETFHSKSDG WRHCDGCKKR LHCGCIMSCH  120
TYTELDYGGV GCSKCLLRSK KSMESAANEG MYLTTLSDSD THSVASSEII AECCSPGSSK  180
GKASAHIGEN SNVDSSGHTG CEEGVESETP RVDASTQNHL YPQSLLKMTS HEQLQKISGK  240
SNIDAIPLFE KSLTASDTFL NTARLVIPKK CAEAHFPKIS ETQGFPITIQ DYTGRDWKFQ  300
YRCWQNSNSK KMYVLEGLKD YMILNQWQVG DTVTFHRTEQ EGKLIIGTKK TPASVASIQA  360
LKEKIWKLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-372303504122B3 domain-containing transcription repressor VAL1
5yzz_C2e-372303504122B3 domain-containing transcription repressor VAL1
5z00_C2e-372303504122B3 domain-containing transcription repressor VAL1
5z00_G2e-372303504122B3 domain-containing transcription repressor VAL1
5z00_K2e-372303504122B3 domain-containing transcription repressor VAL1
5z00_M2e-372303504122B3 domain-containing transcription repressor VAL1
6j9a_A2e-372303605132B3 domain-containing transcription repressor VAL1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226707.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226707.20.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
TrEMBLA0A251PMZ60.0A0A251PMZ6_PRUPE; Uncharacterized protein
STRINGXP_008226707.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1597856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-38high-level expression of sugar-inducible gene 2