PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008226457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 439aa MW: 47664.1 Da PI: 7.3245 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.9 | 2.7e-32 | 43 | 126 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas 83 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el +++s +++++ +++s ++a XP_008226457.1 43 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELPSWNPHSVstTTASTAVTAM 126 79**************************************************************55555333221122211111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-29 | 43 | 222 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.273 | 45 | 103 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MGDTHHHHHP QATTSSRLGI RPSSGLSADI VEVVRGSHIV RSTGRKDRHS KVCTAKGPRD 60 RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKAAI DELDELPSWN PHSVSTTTAS 120 TAVTAMEAQN PTTTGFHCFA AVDAIGSANR RATMVGSGVS EQIVQNQNPL TNSTLLPPSL 180 DSDAIADTIK SFFPMGASAG AAEAPSSTIQ FQNYPPDLLS RTSSQSQDLR LSLHSFQDPI 240 LLQHQQAQAQ HHQAQTHQNE QTLFSGTQQQ NPLGFDGWTE HHHQQQQAEM NRFQRMVAWN 300 SAGGGDTGNG GGSSSSAGFV FNSLLPTQQS TSSLQPSLFG QGHFFSSQRG PLQSSNSPSV 360 RAWMMDQQNQ QSISHDHHHH HQISPTIHHH NQSSSSISNM GFASGGGFPG FHIPARIHGE 420 EEHDGISDKP SSASSNSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 50 | 103 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 50 | 103 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008226457.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008226457.1 | 0.0 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-106 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A251PLZ7 | 0.0 | A0A251PLZ7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226457.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-46 | TCP family protein |