PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226382.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 366aa    MW: 41318.9 Da    PI: 7.5853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226382.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
   XP_008226382.1 14 KGPWSPEEDSKLKEYIEKQGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.79.5e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_008226382.1  69 GEFSDEEDGIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.941962IPR017930Myb domain
SuperFamilySSF466895.01E-2611109IPR009057Homeodomain-like
SMARTSM007171.4E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001671.39E-81662No hitNo description
PROSITE profilePS5129421.18563117IPR017930Myb domain
SMARTSM007173.1E-1067115IPR001005SANT/Myb domain
PfamPF002492.7E-1069111IPR001005SANT/Myb domain
CDDcd001673.35E-770113No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGRAPWCDKA NVKKGPWSPE EDSKLKEYIE KQGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDGIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
HMAPPSHHHH HHQRNSLKPP PFPSSSHHNY QNQPLIPSQP LSSLFKDLSS TYNRSFSSGF  180
EIPHLSMTSN NFSNSTTNSS LFPTQECLVG SMQYNNYPVK KNSNQNNLLM FGSEGSCSTS  240
SDGSCNQISY DRESNIKQEE MVFQSFDQDQ NNQRFMMLNY GNNNSGCSTG SAGHDHHHVI  300
NQWCERPDGF DHLGAENTLG YCDLEDVKQL ISGGNNLNIS VNGSKSNSLF SNVDENKTEE  360
KVMYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744720.0DQ074472.1 Malus x domestica MYB24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226382.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A251NNI90.0A0A251NNI9_PRUPE; Uncharacterized protein
STRINGXP_008226382.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.15e-75MYB family protein