PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226337.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family DBB
Protein Properties Length: 293aa    MW: 31172.9 Da    PI: 5.012
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226337.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-06447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e++  C  ++  lC  C ++ Hk       H++vpl
  XP_008226337.1  4 QCNVCEAAEANVLCCADEAALCWACDEKVHKAnklaskHQRVPL 47
                    7******99*********************88999999999986 PP
2zf-B_box28.43.4e-095292337
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    ++kC+ ++e    +fC +++ llC++C +++H        H
  XP_008226337.1 52 MPKCDICQEAIGYFFCLEDRALLCRTCDVAIHAAnslvsaH 92
                    799******999********************655566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000212.70E-7347No hitNo description
PfamPF006433.5E-5447IPR000315B-box-type zinc finger
SMARTSM003369.1E-11447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1155097IPR000315B-box-type zinc finger
SMARTSM003368.7E-165097IPR000315B-box-type zinc finger
PfamPF006432.0E-65284IPR000315B-box-type zinc finger
CDDcd000212.15E-75397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHKANKLAS KHQRVPLSAS HMPKCDICQE  60
AIGYFFCLED RALLCRTCDV AIHAANSLVS AHRRFLLTGI RVGPEPTEPD SGGGGGGGGV  120
GVGVGASSSS VKSRSGSGSG SRCDTPNPMP VECKVAPAGV DVMPFAGGSS AGTVPQWHID  180
EFLGLSDFDQ SFSYIENGSS KADCGKLGEY DSPGLKSSEE ELEDYECIGE VPETSWMVPQ  240
VPSPPTASGL YWPRSSQISS DFAVFVPDIC HSQMQNPLYS QHNGTVSKRR RQF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226337.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7321780.0JQ732178.1 Prunus persica light-regulated zinc finger protein 1 (LZF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226337.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-85BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM5WGR00.0M5WGR0_PRUPE; Uncharacterized protein
STRINGXP_008226337.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-86light-regulated zinc finger protein 1