PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008226089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 523aa MW: 59729.4 Da PI: 7.6378 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 358 | 406 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +l+++v q G g+W++ r + +Rt+ ++k++w+++l XP_008226089.1 358 SWTSSEVMKLIEGVSQCGVGRWSAMKRLLFsscSHRTAVDIKDKWRNLL 406 6***********************888887*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.187 | 351 | 410 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-9 | 355 | 408 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.57E-14 | 358 | 412 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-12 | 358 | 407 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-7 | 358 | 406 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.45E-17 | 359 | 407 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MFQGTDNAVC HGRISLPTCQ EYLWEAKHSD KVFKSEGGPD SCLQNAGLES HSPGVYEEYC 60 GAEMSDLSCE STPRLGYKDN CSSLLLDHMS VQERQLDFRN MFRYETPVID KQWPKHSISP 120 GLQNFFELES GSNLAECGLM TKKNEGKTVL SSSIEFFGKD TGTIKGSLSD EGMSGDLQVK 180 WKKLADLESL KTSNSRVCEI ELCSSDERDK AGAFAMQKRS RRPPRRYIEE LAESKSKFYI 240 RKCGVACKRS KNSFLHVRSD KNNRQKETQE ETLLCQDKSY EVGCIQVPFG LPMEAGQLEE 300 HNSSLNSEDC KDHRLLRSSE KLEIEYSPAK SREEISDDEC VLRRSTQKGS KQIKHYTSWT 360 SSEVMKLIEG VSQCGVGRWS AMKRLLFSSC SHRTAVDIKD KWRNLLKASC TQLQKERKIK 420 RDISKQASDH VPESVLQRVR ELAVIYPYPR RKRIFSKIPR YRDRAGQLQC LESTFSIQGI 480 CCNNNSEDCK DHRLLGSSEK LEIEYSPAKS REEISEDESE FFI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008226089.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008226089.1 | 0.0 | PREDICTED: uncharacterized protein LOC103325679 isoform X2 | ||||
TrEMBL | A0A251NNG2 | 0.0 | A0A251NNG2_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251NNH1 | 0.0 | A0A251NNH1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226083.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 5e-28 | TRF-like 6 |