PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 40371.6 Da PI: 4.4417 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.5 | 4.2e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v XP_008225989.1 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVN 99 79****************************.99**************96435566888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg+kktLv+y+grap+g +t+Wvmheyrl XP_008225989.1 100 S-QQRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-64 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.431 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS QQRPVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLVDSVCGN ASSSLKDSYA LCRVFKKTIQ MPKNNKEEKP IGIDNAENDS 180 VWVSNNEQLL GEDNSGINET ASRGIETDQD ENYSNHDYPK FLSDTSSSDL TQGTPTENGI 240 ADDFQAPFAS DEANSSADLY SFGVRCSSNL IDQETYIPHN ESLLNNYQFP YPPLELEDFP 300 QINLAAEANA SKPEIIDDYM SYDKFKDYMN GTFEEIFSLC SSQDNSAALP MQEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-60 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-60 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-60 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-60 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-60 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 9e-60 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 9e-60 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225989.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225989.1 | 0.0 | PREDICTED: NAC domain-containing protein 86 | ||||
TrEMBL | A0A314UQ03 | 0.0 | A0A314UQ03_PRUYE; NAC domain-containing protein 86 | ||||
STRING | XP_008225989.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-109 | NAC domain containing protein 20 |