PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225965.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 501aa    MW: 54524.7 Da    PI: 7.572
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225965.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.7e-10133157226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+G+ CkF H+
  XP_008225965.1 133 GEKDCAHYMLTRTCKFGELCKFDHP 157
                     7889********************8 PP
2zf-CCCH28.33e-09184210127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f +t  Ck+G rCkF+H++
  XP_008225965.1 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210
                     5789*********************96 PP
3zf-CCCH39.59.5e-13233257327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG+Ck+G++CkF+H++
  XP_008225965.1 233 EPPCAFYMKTGQCKFGATCKFHHPK 257
                     79*********************96 PP
4zf-CCCH38.42e-12307332126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+++H+
  XP_008225965.1 307 PGEPDCPFYLKTGSCKYGATCRYNHP 332
                     5789*********************9 PP
5zf-CCCH36.96.2e-12394416426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +C+++++tG+C++G++Ck++H+
  XP_008225965.1 394 IECDYYMKTGECRFGEQCKYHHP 416
                     68********************8 PP
6zf-CCCH40.25.5e-13447472227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + ++C ++++tGtCkyG++CkF H+p
  XP_008225965.1 447 GVAICVYYLKTGTCKYGATCKFDHPP 472
                     5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.436131159IPR000571Zinc finger, CCCH-type
SMARTSM003560.014131158IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7133157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183183211IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018183210IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-6185210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4189211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.948230258IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6230257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6233258IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10233257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5235256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892306334IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7306333IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10308332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5311333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4312331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6389418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028390418IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6390417IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9393416IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4396416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516445473IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-8445472IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10447472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6448472IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6450470IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSSHLYGYGA AQSAAAAAAA TAGLSSVYTS RALTDPTLRY LSGSDPFASA TDHHSRSSSM  60
YLATSHLMSQ SSWPTPDVEP GVPGVKRPSE ALYHQSFMGT YNTIGQEAWY SALAKRPRYE  120
SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL  180
PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADAFALPER PSEPPCAFYM  240
KTGQCKFGAT CKFHHPKDIQ IPSAEQENKI GETGTTIQPE GTGFAVKLPV SFSPALLYNS  300
KELPVRPGEP DCPFYLKTGS CKYGATCRYN HPDRYDFCAA INPPIGAISH PIVAPPAAGL  360
NIGVINPAAS IYQTLAQPTV GGGQTVYPQR FGQIECDYYM KTGECRFGEQ CKYHHPIDRS  420
AVALSTTKPV QQQNVKLTLA GLPRREGVAI CVYYLKTGTC KYGATCKFDH PPPGEVMGMA  480
ASEGASGGEA KVDEFTQEQQ Q
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225965.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818006e-64LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132556e-64LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225965.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A314ZAA00.0A0A314ZAA0_PRUYE; Zinc finger CCCH domain-containing protein 37 isoform X1
STRINGXP_008225965.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)