PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225879.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 886aa MW: 101845 Da PI: 8.4515

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225879.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.6	1.2e-24	95	203	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdgkw 76 +fY+eYAk+vGF ++++s++s+ +g++++++f C+++g+++e++++ +++ r +r+ ++t+Cka+++vk++ dg+w XP_008225879.1 95 SFYREYAKSVGFAAVIKASRRSRVSGKFIDAKFACTRYGSKRESSTAeapesvsnsressicssvkRKRGRASRSWEKTDCKACMHVKRQ-DGRW 188 5***************************************999999***********998888899*************9. PP FAR1 77 evtkleleHnHelap 91 + ++ +eHnHe++p XP_008225879.1 189 IIRSFIKEHNHEIFP 203 **********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-22	95	203	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-30	322	414	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.198	602	638	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-5	611	636	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-4	613	640	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MGIDLEQPSG EYHKEDNRRS VNNIVDGRGE ENHRAIVSVT NGPVKDKENA GQNVNGRVSD 60 TRNKTVTRDE INLNSSRDSE PRDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG 120 KFIDAKFACT RYGSKRESST AEAPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH 180 VKRQDGRWII RSFIKEHNHE IFPDQAYYFR GHRNFDLGTG DADGLHAIRR RTKKMYVNMA 240 RQSGGYKKLD NQKGGGTNQS LSGKHLSLEE GDAQVMLDHF LYMQDENPNF FYAIDLNEEQ 300 RLRNVFWVDA KGKLDYGNFC DVVFLDTTYI KNEYKLPFVP FIGVNHHFQF ILLGCALLAN 360 ESKSTYVWLM RAWLKAMGGH APKVILSDQN KVLKEAIAEV LPDSRHCLCL WHILGKIPEK 420 LGYVIRQHDK FMVKFNKCIF KSWTNEQFEK RWWKMVERFN LRDDVWFQSL YEDREQWIPT 480 YMRDIFLAGM STTQRSESIN SFFDKYMQRK TTLKEFLEQY KTILREKYEE EVKADFETWH 540 KQPALRSPSP FGKQMATMYT HAIFKKFQVE VLGVVACHPK KETEDGAIKT FRVQDFEEDQ 600 DFVVAWNEMT SDISCFCHSF EFNGFLCRHV MIVLQMSGVH NIPSQYILKR WTKDAKNRQT 660 LREGSASVDC RVKRYNDICE RAFKLSDEGS LSQESYNIAF NALEEALRSC ESINNSIQSV 720 IEPISGETHG SEGVNQGNSK NKTNKKNGAS KKGQVQSEPE VITIGVQESW QQVEQLVSRA 780 PTLDGYFGSQ QIVQGTGQPS TIASSRDHYY SNQHMQGLGQ LNSIAPIHDA HYITQQRLHG 840 VLHFRPQSIP SCFDIPDGLQ DTSTVGPTQL HGLASRHLHS KDLSRQ

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MGIDLEQPSG EYHKEDNRRS VNNIVDGRGE ENHRAIVSVT NGPVKDKENA GQNVNGRVSD  60
TRNKTVTRDE INLNSSRDSE PRDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG  120
KFIDAKFACT RYGSKRESST AEAPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH  180
VKRQDGRWII RSFIKEHNHE IFPDQAYYFR GHRNFDLGTG DADGLHAIRR RTKKMYVNMA  240
RQSGGYKKLD NQKGGGTNQS LSGKHLSLEE GDAQVMLDHF LYMQDENPNF FYAIDLNEEQ  300
RLRNVFWVDA KGKLDYGNFC DVVFLDTTYI KNEYKLPFVP FIGVNHHFQF ILLGCALLAN  360
ESKSTYVWLM RAWLKAMGGH APKVILSDQN KVLKEAIAEV LPDSRHCLCL WHILGKIPEK  420
LGYVIRQHDK FMVKFNKCIF KSWTNEQFEK RWWKMVERFN LRDDVWFQSL YEDREQWIPT  480
YMRDIFLAGM STTQRSESIN SFFDKYMQRK TTLKEFLEQY KTILREKYEE EVKADFETWH  540
KQPALRSPSP FGKQMATMYT HAIFKKFQVE VLGVVACHPK KETEDGAIKT FRVQDFEEDQ  600
DFVVAWNEMT SDISCFCHSF EFNGFLCRHV MIVLQMSGVH NIPSQYILKR WTKDAKNRQT  660
LREGSASVDC RVKRYNDICE RAFKLSDEGS LSQESYNIAF NALEEALRSC ESINNSIQSV  720
IEPISGETHG SEGVNQGNSK NKTNKKNGAS KKGQVQSEPE VITIGVQESW QQVEQLVSRA  780
PTLDGYFGSQ QIVQGTGQPS TIASSRDHYY SNQHMQGLGQ LNSIAPIHDA HYITQQRLHG  840
VLHFRPQSIP SCFDIPDGLQ DTSTVGPTQL HGLASRHLHS KDLSRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225879.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225879.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X5
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	M5WQ40	0.0	M5WQ40_PRUPE; Uncharacterized protein
STRING	XP_008225874.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]