PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 888aa MW: 102030 Da PI: 8.4515 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.6 | 1.2e-24 | 95 | 203 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdgkw 76 +fY+eYAk+vGF ++++s++s+ +g++++++f C+++g+++e++++ +++ r +r+ ++t+Cka+++vk++ dg+w XP_008225877.1 95 SFYREYAKSVGFAAVIKASRRSRVSGKFIDAKFACTRYGSKRESSTAeapesvsnsressicssvkRKRGRASRSWEKTDCKACMHVKRQ-DGRW 188 5*****************************************999999***************998888899*****************9.**** PP FAR1 77 evtkleleHnHelap 91 + ++ +eHnHe++p XP_008225877.1 189 IIRSFIKEHNHEIFP 203 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-22 | 95 | 203 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-30 | 322 | 414 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.198 | 602 | 638 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.4E-5 | 611 | 636 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.7E-4 | 613 | 640 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 888 aa Download sequence Send to blast |
MGIDLEQPSG EYHKEDNRRS VNNIVDGRGE ENHRAIVSVT NGPVKDKENA GQNVNGRVSD 60 TRNKTVTRDE INLNSSRDSE PRDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG 120 KFIDAKFACT RYGSKRESST AEAPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH 180 VKRQDGRWII RSFIKEHNHE IFPDQAYYFR GHRNFDLGTG DADGLHAIRR RTKKMYVNMA 240 RQSGGYKKLD NQKGGGTNQS LSGKHLSLEE GDAQVMLDHF LYMQDENPNF FYAIDLNEEQ 300 RLRNVFWVDA KGKLDYGNFC DVVFLDTTYI KNEYKLPFVP FIGVNHHFQF ILLGCALLAN 360 ESKSTYVWLM RAWLKAMGGH APKVILSDQN KVLKEAIAEV LPDSRHCLCL WHILGKIPEK 420 LGYVIRQHDK FMVKFNKCIF KSWTNEQFEK RWWKMVERFN LRDDVWFQSL YEDREQWIPT 480 YMRDIFLAGM STTQRSESIN SFFDKYMQRK TTLKEFLEQY KTILREKYEE EVKADFETWH 540 KQPALRSPSP FGKQMATMYT HAIFKKFQVE VLGVVACHPK KETEDGAIKT FRVQDFEEDQ 600 DFVVAWNEMT SDISCFCHSF EFNGFLCRHV MIVLQMSGVH NIPSQYILKR WTKDAKNRQT 660 LREGSASVDC RVKRYNDICE RAFKLSDEGS LSQESYNIAF NALEEALRSC ESINNSIQSV 720 IEPISGETHG SEGVNQGNSK NKTNKKNGAS KKGQVQSEPE VITIGVQESW QQVEQLVSRA 780 PTLDGYFGSQ QIVQGTGQPS TIASSRDHYY SNQHMQGLGQ LNSIAPIHDA HYITQQRLHG 840 VGQLHFRPQS IPSCFDIPDG LQDTSTVGPT QLHGLASRHL HSKDLSRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225877.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225877.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | M5WQ40 | 0.0 | M5WQ40_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225874.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |