PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225592.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93018.9 Da    PI: 6.2477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225592.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182179357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_008225592.1 21 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                    6789*****************************************************97 PP
2START168.54.4e-531703762203
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+  W ++++  ++l  i  g  g+++l+
  XP_008225592.1 170 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRTSWFRDCRCLDVLSLIPAGngGTIELT 263
                     68999*****************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lrsl+
  XP_008225592.1 264 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgppSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPEVLRSLY 358
                     ****************************************99999999*********************************************** PP

                     HHHHHHHHHHHHHHTXXX CS
           START 186 ksglaegaktwvatlqrq 203
                     +s+ + ++k++ ++l++ 
  XP_008225592.1 359 ESSKILAQKMTISALRHI 376
                     ************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-19879IPR009057Homeodomain-like
PROSITE profilePS5007115.6941680IPR001356Homeobox domain
SMARTSM003894.2E-151884IPR001356Homeobox domain
SuperFamilySSF466891.28E-162082IPR009057Homeodomain-like
CDDcd000863.00E-162181No hitNo description
PfamPF000464.4E-162179IPR001356Homeobox domain
CDDcd146863.71E-673112No hitNo description
PROSITE profilePS5084826.76160388IPR002913START domain
CDDcd088758.70E-69164380No hitNo description
Gene3DG3DSA:3.30.530.204.0E-23168374IPR023393START-like domain
SMARTSM002347.3E-50169379IPR002913START domain
SuperFamilySSF559614.4E-37170381No hitNo description
PfamPF018521.2E-50170377IPR002913START domain
PfamPF086709.5E-50704848IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MALVMNRDSP GSSSKQMDSS KYVRYTPEQV EALERVYSEC PKPSSLRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KESSRLQTVN RKLTAMNKLL MEENDRLQKQ VSHLVYENGF  120
MRQQLHSASG TTTDNSCESV VMSGQHQQQQ NPTPQHPQRD ANNPAGLLAI AEETLAEFLS  180
KATGTAVDWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRTSWF  240
RDCRCLDVLS LIPAGNGGTI ELTYMQTYAP TTLAAARDFW TLRYTTSLED GSLVVCERSL  300
TSSTGGPTGP PSASFVRAEM LPSGYLIRPC EGGGSIINIV DHVDLDAWSV PEVLRSLYES  360
SKILAQKMTI SALRHIRQIA QETSGEIQYG GGRQPAVLRT FCQRLCRGFN DAVNGFADDG  420
WSLMGSDGVE DVTITINSSP NKFLGSQYNA SIFPTFGGGV LCAKASMLLQ SVPPALLVRF  480
LREHRSEWAD YGVDAYSAAC LKASPYAVPC ARPGGFPSSQ VILPLAQTVE NEEFLEVVRL  540
EGHAFSPEDV ALARDMYLLQ LCSGVDENAV GSCAQLVFAP IDESFADDAP LLPSGFHVIP  600
LDPKTDGPTA NRTLDLASTL EVGPSGSRPV NEADGNSYNL RSVLTIAFQF TFENHLRDNV  660
AAMARQYVRS VVSSVQRVAM AIAPSRLSSQ MVPKPLPGSP EAHTLARWIC RSYRIHTGAE  720
LFRVDSPSGD AVLKQLWHHS DAIMCCSVKT NASPVFTFAN QAGLDMLETT LVALQDIMLD  780
KILDEAGRKI LCSEFSKIMQ QGFAYLPAGL CASSMGRPVS YDQAVAWKVV NDDDSNHCLA  840
FMFMSWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225592.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0005520.0KJ000552.1 Prunus persica homeobox protein 14 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214622.10.0homeobox-leucine zipper protein ATHB-14
RefseqXP_008225592.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLM5WRH30.0M5WRH3_PRUPE; Homeobox protein 14
STRINGXP_008225592.10.0(Prunus mume)
STRINGEMJ158210.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]