PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 499aa MW: 54218.9 Da PI: 7.7851 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.8 | 1.3e-36 | 67 | 235 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai el+++ XP_008225509.1 67 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAAEAIAELPSLnnsfpdtpkqlsdekrascehgfdsaevele 161 689*************************************************************9999999999988888888885555555444 PP TCP 66 ...ssssasec....eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 +++++++++n+s+ + +++a+s++s++s+ s l+l++ r kar+rarer ++++ +++ XP_008225509.1 162 ghgH------GdpnyHHHQNQNQTQNQSQYLSLSKSACSSNSETSKGSGLSLSRseirVNRVKARERARERAAKDKEKES 235 3321......0222356677777777777777888888888888888888888853335559999999998877776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.2E-44 | 68 | 233 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.407 | 69 | 127 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.441 | 213 | 233 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MEVEEIQAQA CKFPRIGNGS SRATNPAADD EDQDPSCLDF KRDTTADAGN RLRGWHHSRI 60 IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA 120 AEAIAELPSL NNSFPDTPKQ LSDEKRASCE HGFDSAEVEL EGHGHGDPNY HHHQNQNQTQ 180 NQSQYLSLSK SACSSNSETS KGSGLSLSRS EIRVNRVKAR ERARERAAKD KEKESNESAS 240 HIAHHPQQNS SNLNNSISQS ASFTELLTGG IGTNSSNNNN SPTAAAHQQQ NHGGGGGEPI 300 LFHKAAAAGG GGPMDYFSSG LLGLSSSTRT HHSSGFPGQI QLGMNSIPQT MSVVSPFSVS 360 GDHHHNHNPE LQHFSFVPDH LIPVTTSSQP GNGGDYNLNF SISSSGGLAG FNRGTLQSNS 420 SSSPSLLPHH LQRFSPIDGS SNVPFFIGAA AAPTMENHHH HHHHHQQHQQ QFPAGFDRRL 480 QHPYGDGSRH SDHKGKAKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-24 | 74 | 128 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-24 | 74 | 128 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225509.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225508.1 | 0.0 | PREDICTED: transcription factor TCP2 | ||||
Refseq | XP_008225509.1 | 0.0 | PREDICTED: transcription factor TCP2 | ||||
Refseq | XP_008225510.1 | 0.0 | PREDICTED: transcription factor TCP2 | ||||
Refseq | XP_008225511.1 | 0.0 | PREDICTED: transcription factor TCP2 | ||||
Refseq | XP_016648675.1 | 0.0 | PREDICTED: transcription factor TCP2 | ||||
TrEMBL | M5WID2 | 0.0 | M5WID2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225508.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-35 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |