PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225407.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28119.8 Da    PI: 9.8413
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225407.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_008225407.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                    79***********************************************8 PP
2K-box111.68.3e-37941906100
           K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkkl 98 
                     ++  ++ea ++++qqe+akL+++i nLq++ Rh++Ge+L+s+++k+L++Le++Lek++++iRskKnell+++ie++qk+ e +l+++n+ Lr+k+
  XP_008225407.1  94 NTGsVSEASTQYYQQEAAKLRAQIGNLQNSSRHMMGESLSSMNMKDLKNLESKLEKGINRIRSKKNELLFAEIEYMQKRqEIDLHNNNQLLRAKI 188
                     333599**********************************************************************9983679***********9 PP

           K-box  99 ee 100
                     +e
  XP_008225407.1 189 AE 190
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.6131777IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-411776IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-331895IPR002100Transcription factor, MADS-box
CDDcd002659.61E-451892No hitNo description
PRINTSPR004046.0E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003191.2E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-335475IPR002100Transcription factor, MADS-box
PfamPF014863.9E-27100188IPR002487Transcription factor, K-box
PROSITE profilePS5129715.558103194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAYENKSMSL DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKE TIERYKKACA ESTNTGSVSE ASTQYYQQEA AKLRAQIGNL  120
QNSSRHMMGE SLSSMNMKDL KNLESKLEKG INRIRSKKNE LLFAEIEYMQ KRQEIDLHNN  180
NQLLRAKIAE NERSQQNINV MAGGGSYEIM QSQPYDSRNY FQVNALQPNH QYNSRQDPMA  240
LQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q2e-201785169Myocyte-specific enhancer factor 2B
1tqe_R2e-201785169Myocyte-specific enhancer factor 2B
1tqe_S2e-201785169Myocyte-specific enhancer factor 2B
6c9l_A2e-201785169Myocyte-specific enhancer factor 2B
6c9l_B2e-201785169Myocyte-specific enhancer factor 2B
6c9l_C2e-201785169Myocyte-specific enhancer factor 2B
6c9l_D2e-201785169Myocyte-specific enhancer factor 2B
6c9l_E2e-201785169Myocyte-specific enhancer factor 2B
6c9l_F2e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0687300.0EU068730.1 Prunus mume AGAMOUS-like protein (AG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225407.11e-180PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_016648725.11e-180PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_020417370.11e-180floral homeotic protein AGAMOUS isoform X1
RefseqXP_021825648.11e-180floral homeotic protein AGAMOUS isoform X1
RefseqXP_021825653.11e-180floral homeotic protein AGAMOUS isoform X4
SwissprotQ408721e-128AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA7UGU41e-176A7UGU4_PRUMU; AGAMOUS-like protein
TrEMBLA7UHZ11e-176A7UHZ1_PRUPE; AGAMOUS-like protein
TrEMBLD9Z5S21e-176D9Z5S2_9ROSA; AGAMOUS-like protein
STRINGXP_008225406.11e-176(Prunus mume)
STRINGEMJ131241e-177(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-124MIKC_MADS family protein