PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225406.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 304aa    MW: 34893.7 Da    PI: 9.8406
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225406.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.8e-3186135150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_008225406.1  86 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 135
                     79***********************************************8 PP
2K-box118.27.4e-391552506100
           K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++  ++ea ++++qqe+akL+++i nLq++ Rh++Ge+L+s+++k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++
  XP_008225406.1 155 NTGsVSEASTQYYQQEAAKLRAQIGNLQNSSRHMMGESLSSMNMKDLKNLESKLEKGINRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIA 249
                     333599***************************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_008225406.1 250 E 250
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.61378138IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-4178137IPR002100Transcription factor, MADS-box
CDDcd002651.85E-4479153No hitNo description
SuperFamilySSF554551.57E-3379156IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-3280100IPR002100Transcription factor, MADS-box
PROSITE patternPS00350080134IPR002100Transcription factor, MADS-box
PfamPF003191.7E-2687134IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-32100115IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-32115136IPR002100Transcription factor, MADS-box
PfamPF014861.1E-28162248IPR002487Transcription factor, K-box
PROSITE profilePS5129715.587164254IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MIFSLFSYHV IKQNTQTLSH ESSSVASLLL VPSIFLASQP DLFNYQLFLF GPQESKRKLA  60
TMAYENKSMS LDSPQRKLGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV  120
ALIVFSNRGR LYEYANNSVK ETIERYKKAC AESTNTGSVS EASTQYYQQE AAKLRAQIGN  180
LQNSSRHMMG ESLSSMNMKD LKNLESKLEK GINRIRSKKN ELLFAEIEYM QKREIDLHNN  240
NQLLRAKIAE NERSQQNINV MAGGGSYEIM QSQPYDSRNY FQVNALQPNH QYNSRQDPMA  300
LQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-1978146169Myocyte-specific enhancer factor 2B
1tqe_Q1e-1978146169Myocyte-specific enhancer factor 2B
1tqe_R1e-1978146169Myocyte-specific enhancer factor 2B
1tqe_S1e-1978146169Myocyte-specific enhancer factor 2B
6c9l_A1e-1978146169Myocyte-specific enhancer factor 2B
6c9l_B1e-1978146169Myocyte-specific enhancer factor 2B
6c9l_C1e-1978146169Myocyte-specific enhancer factor 2B
6c9l_D1e-1978146169Myocyte-specific enhancer factor 2B
6c9l_E1e-1978146169Myocyte-specific enhancer factor 2B
6c9l_F1e-1978146169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0687300.0EU068730.1 Prunus mume AGAMOUS-like protein (AG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225406.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X3
SwissprotQ408721e-129AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A314YA351e-179A0A314YA35_PRUYE; Floral homeotic protein AGAMOUS isoform X3
STRINGXP_008225406.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-124MIKC_MADS family protein