PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225298.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 417aa MW: 48261.8 Da PI: 8.9351

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225298.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.7e-31	88	141	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ XP_008225298.1 88 PRLRWTPQLHLSFVHAIERLGGQDRATPKLVLQLMNVKGLSISHVKSHLQMYRS 141 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.214	84	144	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-30	84	142	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.02E-14	86	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	88	143	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-8	89	140	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MTNEKDYGDQ EENTSQGSSQ LKCSSFDLNE EAGSDNCDDT KVEEFELSVD EEDEKRGQGN 60 INSSTATSAE GNEGRRGKVR QYVRSKMPRL RWTPQLHLSF VHAIERLGGQ DRATPKLVLQ 120 LMNVKGLSIS HVKSHLQMYR SKKLDGDGQV VSEKRQSTHG RDHIACMSHQ TIKQPRQHVY 180 FRTDNGGIVV ATPSHDHRQP LHSDFKPNVP RSSCSLLNKE VVQGNKSMEM TVRSTAVPIN 240 PSRFLEEKKW PPFGMINKQQ CWRAKRFPTK INWSHNYNGS QSDHLVHHMR TTPRLNNGQF 300 FHNTRSTEWN LGENKNTRRF PSNSHNSISN SSCHKTEFEP PFRLELNEEK ILKYKEWMPE 360 LELGLSQRVE NHEKTIFQHQ MVSEEAYETA QRIKQNYYKE LEDRSKQEIS TKLSLSL

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MTNEKDYGDQ EENTSQGSSQ LKCSSFDLNE EAGSDNCDDT KVEEFELSVD EEDEKRGQGN  60
INSSTATSAE GNEGRRGKVR QYVRSKMPRL RWTPQLHLSF VHAIERLGGQ DRATPKLVLQ  120
LMNVKGLSIS HVKSHLQMYR SKKLDGDGQV VSEKRQSTHG RDHIACMSHQ TIKQPRQHVY  180
FRTDNGGIVV ATPSHDHRQP LHSDFKPNVP RSSCSLLNKE VVQGNKSMEM TVRSTAVPIN  240
PSRFLEEKKW PPFGMINKQQ CWRAKRFPTK INWSHNYNGS QSDHLVHHMR TTPRLNNGQF  300
FHNTRSTEWN LGENKNTRRF PSNSHNSISN SSCHKTEFEP PFRLELNEEK ILKYKEWMPE  360
LELGLSQRVE NHEKTIFQHQ MVSEEAYETA QRIKQNYYKE LEDRSKQEIS TKLSLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	89	143	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	89	143	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	89	143	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	89	143	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	89	143	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	89	143	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	89	143	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	89	143	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225298.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225297.1	0.0	PREDICTED: transcription activator GLK1-like
Refseq	XP_008225298.1	0.0	PREDICTED: transcription activator GLK1-like
TrEMBL	A0A251PGL8	0.0	A0A251PGL8_PRUPE; Uncharacterized protein
STRING	XP_008225297.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	7e-36	G2-like family protein