PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225271.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 265aa    MW: 28639.3 Da    PI: 8.8734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225271.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-1176122354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L k++  +k+L
  XP_008225271.1  76 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLAKVISQVKEL 122
                     58*************************8.....8************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.49773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-976122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1377124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1377124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-1179128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.64E-5161233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAFYSFNSNS SFRSEYSSLF DPFTHGSSGF GGALRGGGSV LPHSLVLDGE KGELVKAPAR  60
VGKKGVSEAK ALAALKNHSE AERRRRERIN AHLSTLRGLV PCTEKMDKAA LLAKVISQVK  120
ELKKDALESS KGFLIPVDAD EVQVEPYDTG AGDGTISVRA SVCCEYRSEL LSDLREALDS  180
LHLKMVKADI ATLGNRVKNV FVFTSCKERS NDADADAFQL LASSVHQALS SVLDKASASP  240
EYSPRTTLPS KRRRVSYFDT SSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186ERRRRE
2250254KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894270.0KP689427.1 Prunus pseudocerasus isolate Unigene6250 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225271.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLM5X4S70.0M5X4S7_PRUPE; Uncharacterized protein
STRINGXP_008225271.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-36bHLH family protein