PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225215.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 287aa    MW: 32628.1 Da    PI: 6.9145
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225215.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.11.6e-34110208298
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg....... 88 
                     +++k rhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+i+WL+++ak+ai +l +++ + +  +c++ ++s ++ ++ +g       
  XP_008225215.1 110 TARKERHSKVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSESELPGKeYDCTNINNSAQQTEQDIGeesmrqf 204
                     789*************************************************************4444434453333333333333332222122 PP

             TCP  89 .kaaksaaksk 98 
                      +       ++
  XP_008225215.1 205 qH-------HQ 208
                     21.......11 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-31111208IPR005333Transcription factor, TCP
PROSITE profilePS5136930.695112170IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSHLQDILRL QMLQQRGSKN EDQDQPEDVQ EEEQQSQKRL IGQYQHVQEP PNYGPLNGKM  60
LNTHIAKSSR KSCYSMSSSS SHLASEQAKI NNARYGKIVK VHGGHIVRST ARKERHSKVY  120
TSKGPRDRRF RLSAPTAIQF YDVQDRLGYD RPSKAIDWLI EKAKAAIEAL SESELPGKEY  180
DCTNINNSAQ QTEQDIGEES MRQFQHHQRS YGGEPEKLNN VNSFKEPVLD HYQLSSMNYA  240
EEALNSGSSL TDSKMEVAWF QSLLAWNYNA GDGGEGCPFN SSHVYLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-19117170154Putative transcription factor PCF6
5zkt_B5e-19117170154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225215.10.0PREDICTED: transcription factor TCP4-like
TrEMBLM5WPC70.0M5WPC7_PRUPE; Uncharacterized protein
STRINGXP_008225215.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.13e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3