PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 161aa MW: 18531.1 Da PI: 5.9745 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.4 | 3.6e-42 | 80 | 156 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+++C+adls+ak+y+rrhkvC vh+kap+v v g++qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+++ XP_008225122.1 80 CQADDCNADLSDAKQYYRRHKVCGVHAKAPAVRVGGVQQRFCQQCSRFHSLPEFDDNKRSCRRRLAGHNERRRKTSS 156 **************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-34 | 73 | 141 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.812 | 77 | 154 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.83E-39 | 78 | 158 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.2E-33 | 80 | 153 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MESNRAHGKR SLNYKMEEEE EEEDEEEEQE EEEDDEDTNR SSLAYGEDER RKRVLMVNSA 60 TTTPNKRGSG AGGSMARPSC QADDCNADLS DAKQYYRRHK VCGVHAKAPA VRVGGVQQRF 120 CQQCSRFHSL PEFDDNKRSC RRRLAGHNER RRKTSSEYHG E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-35 | 70 | 153 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225122.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225122.1 | 1e-116 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q38741 | 7e-41 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | M5WJC0 | 1e-92 | M5WJC0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225122.1 | 1e-115 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 6e-41 | squamosa promoter binding protein-like 5 |
Publications ? help Back to Top | |||
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