PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225091.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LSD
Protein Properties Length: 144aa    MW: 15600.8 Da    PI: 7.222
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225091.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1375.7e-125579125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg+Cr lL Y rGA++V+C++C+tV
  XP_008225091.1 55 CGSCRRLLKYSRGARHVQCSCCQTV 79
                    ************************9 PP

2zf-LSD140.73.8e-1393117125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+Y +GA+sVRC++C++V
  XP_008225091.1  93 CGSCAVLLMYQYGASSVRCSSCQFV 117
                     ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-165282IPR005735Zinc finger, LSD1-type
PfamPF069434.2E-105579IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.5E-1290118IPR005735Zinc finger, LSD1-type
PfamPF069436.8E-1193117IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSSCCLQPPP CVREAETEGR MESTVEVDKG PVPEHQSIAA AQPPPSPSEI AQMVCGSCRR  60
LLKYSRGARH VQCSCCQTVN FVLEADQVGQ VKCGSCAVLL MYQYGASSVR CSSCQFVTEI  120
GEHNKRPPWS VQQGQPLPPA NPVH
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225091.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225091.11e-101PREDICTED: protein LOL2
SwissprotO654264e-42LOL2_ARATH; Protein LOL2
TrEMBLM5WI022e-83M5WI02_PRUPE; Uncharacterized protein
STRINGXP_008225091.11e-101(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-41lsd one like 2