PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008224894.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 460aa MW: 49340.3 Da PI: 6.2214

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008224894.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	354	391	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_008224894.1 354 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 391 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.06E-6	352	395	No hit	No description
SuperFamily	SSF47459	3.14E-10	352	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0087	353	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-8	356	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MAEEFQAGIC GSSWWNTSRH ALVASPCSVG FNDHMGSFGC PNDMVDIKAS RSSCGEINNS 60 VSDHDDDHQH TDSGSVLIDS TLQMIGFDHS SSSSSTPSDL NQALLLSRSG GGRAESNFHN 120 SMLQEGVGVD EDSSSLIDGF KPMSQDFSLD QLGSSSSSGF PITSSSSAAN SYGFPSTFLQ 180 SIFDSEVSQP QPQQSLFNNN HFSNDLLLPP SPTSSCWPPR YSPSSCLRPS AVSLPKQLQP 240 GGGGGGGLHF PNNINTPFWN TPAATALNHG NGIRSSNGLF SSSQSQLTAP ASSALVHEHK 300 PNSHNFTTKG NTNEDVQDSN SVVKKSGSSM SSCEPVFKRA RIETPSPLPT FKVRKEKLGD 360 RITALQQLVS PFGKTDTASV LHEAIEYIKF LHEQVLSTPY MKNGAPMQHQ QGSDHKMKEA 420 EGAKHDLKSR GLCLVPISST FPVANETTDF WTPTFGATFR

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MAEEFQAGIC GSSWWNTSRH ALVASPCSVG FNDHMGSFGC PNDMVDIKAS RSSCGEINNS  60
VSDHDDDHQH TDSGSVLIDS TLQMIGFDHS SSSSSTPSDL NQALLLSRSG GGRAESNFHN  120
SMLQEGVGVD EDSSSLIDGF KPMSQDFSLD QLGSSSSSGF PITSSSSAAN SYGFPSTFLQ  180
SIFDSEVSQP QPQQSLFNNN HFSNDLLLPP SPTSSCWPPR YSPSSCLRPS AVSLPKQLQP  240
GGGGGGGLHF PNNINTPFWN TPAATALNHG NGIRSSNGLF SSSQSQLTAP ASSALVHEHK  300
PNSHNFTTKG NTNEDVQDSN SVVKKSGSSM SSCEPVFKRA RIETPSPLPT FKVRKEKLGD  360
RITALQQLVS PFGKTDTASV LHEAIEYIKF LHEQVLSTPY MKNGAPMQHQ QGSDHKMKEA  420
EGAKHDLKSR GLCLVPISST FPVANETTDF WTPTFGATFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008224894.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224894.1	0.0	PREDICTED: transcription factor bHLH112 isoform X2
TrEMBL	A0A251PEX4	0.0	A0A251PEX4_PRUPE; Uncharacterized protein
STRING	XP_008224893.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-51	bHLH family protein