PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224792.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 750aa    MW: 82018.7 Da    PI: 6.3637
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224792.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.3e-2071126156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_008224792.1  71 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 126
                     789999***********************************************998 PP
2START221.13.5e-692634861206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     ela +a++el+++a+a+ep+Wv          e++n+de+l++f+++ +      ++ea+r+s++v+m++++lve+l+d++ qW++ +     +a
  XP_008224792.1 263 ELAVAAMEELIRMAQAGEPLWVPGDhnsshnhEILNEDEYLRTFPRGIGptplgLKSEASRESALVIMNHVNLVEILMDVN-QWSTVFCgivsRA 356
                     57899*****************77677789****************999********************************.******99999** PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                     +tl+ +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p    + R++++pSg+li++++ng+skv+wv
  XP_008224792.1 357 MTLDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHVDGTWAVVDVSLDNLRPSP----ISRSRRRPSGCLIQELPNGYSKVIWV 447
                     ***************************************************************99....69************************ PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ehv++++r++h+++r+lv+sgla+gak+wvatl+rqce+
  XP_008224792.1 448 EHVEVDDRSVHNIYRPLVNSGLAFGAKRWVATLDRQCER 486
                     *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2250126IPR009057Homeodomain-like
SuperFamilySSF466891.67E-1954128IPR009057Homeodomain-like
PROSITE profilePS5007116.95768128IPR001356Homeobox domain
SMARTSM003895.9E-1969132IPR001356Homeobox domain
CDDcd000867.29E-1970129No hitNo description
PfamPF000462.2E-1771126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
SuperFamilySSF559616.5E-35254488No hitNo description
PROSITE profilePS5084844.378254489IPR002913START domain
CDDcd088756.36E-128258485No hitNo description
SMARTSM002341.8E-70263486IPR002913START domain
PfamPF018528.2E-58264486IPR002913START domain
Gene3DG3DSA:3.30.530.207.4E-6369486IPR023393START-like domain
SuperFamilySSF559611.51E-26506741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MYQPSMFENH HHILDHMTTS STHKTSESTE VLGKSRLLDD DFETKSGTET TTDAPSGDEQ  60
DPNNTGPRPK RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN  120
KRTQMKAQHE RHENSILKSE NDKLRAENNR YKEALGNATC PNCGGPAALG EMSFDEQHLR  180
IENARLREEI DRISSIAAKY VGKPLSSSFS SHIPPHVPSR SLDLGVGSFG AQSGFVGEMY  240
GSSSDLLRSV SVPTDADKPM IVELAVAAME ELIRMAQAGE PLWVPGDHNS SHNHEILNED  300
EYLRTFPRGI GPTPLGLKSE ASRESALVIM NHVNLVEILM DVNQWSTVFC GIVSRAMTLD  360
ILSTGVAGNY NGALQVMTAE FQVPSPLVPT RENYFVRYCK QHVDGTWAVV DVSLDNLRPS  420
PISRSRRRPS GCLIQELPNG YSKVIWVEHV EVDDRSVHNI YRPLVNSGLA FGAKRWVATL  480
DRQCERLASS MASNIPGGAI CVITSPEGRK SMLKLAQRMV MSFCTGVGAS TAHAWTTLSA  540
TGSDDVRVMT RKSMDDPGRP PGIVLSAATS FWIPVPPKRV FDFLRDENSR TEWDILSNGG  600
LVQEMAHIAN GRDPGNSVCL LRVNSANSSQ SNMLILQESC TDSTGSYVIY APVDIVAMNV  660
VLSGGDPDYV ALLPSGFAIL PDGPTGPAGG GGGGILDVGS GGSLLTVAFQ ILVDSVPTAK  720
LSLGSVATVN NLIKCTVERI RAAVTCEQNA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224792.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLM5X9K70.0M5X9K7_PRUPE; Uncharacterized protein
STRINGXP_008224792.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]