PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008224747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 240aa MW: 26712.2 Da PI: 8.2555 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.8 | 3.1e-30 | 65 | 115 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ XP_008224747.1 65 PRLRWTPDLHHCFVHAVERLGGEQRATPKMVLQIMNVKGLTISHVKSHLQE 115 8*************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.798 | 61 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-29 | 61 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-13 | 63 | 119 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-22 | 65 | 115 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-7 | 66 | 115 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKSSLKGSPS SCVDNGDDDD HQAGQRLVLY HHLLAAADHH QRSGLQKSPS SSSTPVRPYV 60 RSKMPRLRWT PDLHHCFVHA VERLGGEQRA TPKMVLQIMN VKGLTISHVK SHLQEAKETL 120 KDETKQAMWI EKKVTREQNP NSFIIFKDLL KRCTDAQESN DQGKAVSLVS AGCKSNHKEF 180 EDVLLCEESE SSMRVVSNND ARMSLSLNSS PKASHELLRL SKAAGNSDMN DVSLELTLST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 66 | 117 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 66 | 117 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-17 | 66 | 117 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 66 | 117 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 66 | 117 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 66 | 117 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 66 | 117 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 66 | 117 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 66 | 117 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 66 | 117 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 66 | 117 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 66 | 117 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008224747.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224747.1 | 1e-179 | PREDICTED: probable transcription factor KAN4 | ||||
TrEMBL | A0A251PEB6 | 1e-73 | A0A251PEB6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224747.1 | 1e-178 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9381 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-31 | G2-like family protein |