PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008224660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 291aa MW: 31737.9 Da PI: 6.996 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.4 | 3.2e-33 | 35 | 89 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGGs kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_008224660.1 35 KPRLRWTADLHERFVDAVSQLGGSSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 89 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 32 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.295 | 32 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.77E-16 | 35 | 89 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 35 | 89 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-8 | 37 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.0E-15 | 116 | 161 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MFPRLMQAPH EGIVGEEDMQ GHRGDPCLVL TSDPKPRLRW TADLHERFVD AVSQLGGSSK 60 ATPKAIMRTM NVKGLTLFHL KSHLQKYRLA SYLLESPGTG NSSPNLPTSD LNEGYEVKEA 120 LRAQMEVQSK LHVQVEAEKH LQIRQDAERR YMAMLERACK MLADQFIGGS VTDTDSHKCH 180 GLGNKNTKGP SLDPLGFYSL QSTDVAGVHG PEEEVPTSIH TQRADCSTES CLTSHESPGG 240 LTLEGSPGGG KKRMLSLDSA AASLIWGEAK VRTQEINVAA VNPHGIARYG M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-21 | 35 | 92 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-21 | 35 | 92 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-21 | 35 | 92 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-21 | 35 | 92 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-21 | 35 | 92 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-21 | 35 | 92 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-21 | 35 | 92 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-21 | 35 | 92 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-21 | 35 | 92 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-21 | 35 | 92 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-21 | 35 | 92 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-21 | 35 | 92 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008224660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT893405 | 0.0 | KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224660.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X2 | ||||
TrEMBL | A0A251PDJ0 | 0.0 | A0A251PDJ0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224659.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 6e-57 | G2-like family protein |