PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008224659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 305aa MW: 33185.5 Da PI: 6.9964 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.2 | 3.7e-33 | 35 | 89 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGGs kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_008224659.1 35 KPRLRWTADLHERFVDAVSQLGGSSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 89 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 32 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.778 | 32 | 92 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-23 | 35 | 90 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.33E-16 | 35 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.4E-8 | 37 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.3E-15 | 130 | 175 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MFPRLMQAPH EGIVGEEDMQ GHRGDPCLVL TSDPKPRLRW TADLHERFVD AVSQLGGSSK 60 ATPKAIMRTM NVKGLTLFHL KSHLQKYRLG KQSGKEMGDV SKDASYLLES PGTGNSSPNL 120 PTSDLNEGYE VKEALRAQME VQSKLHVQVE AEKHLQIRQD AERRYMAMLE RACKMLADQF 180 IGGSVTDTDS HKCHGLGNKN TKGPSLDPLG FYSLQSTDVA GVHGPEEEVP TSIHTQRADC 240 STESCLTSHE SPGGLTLEGS PGGGKKRMLS LDSAAASLIW GEAKVRTQEI NVAAVNPHGI 300 ARYGM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008224659.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT893405 | 0.0 | KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224659.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X1 | ||||
Swissprot | Q94A57 | 7e-64 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | M5WGF6 | 0.0 | M5WGF6_PRUPE; Myb family transcription factor APL | ||||
STRING | XP_008224659.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-66 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|