PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008224558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 42874.4 Da PI: 8.0053 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+e+C++f+r G C++GdrCkF H+ XP_008224558.1 4 KREPCKYFQR-GSCQFGDRCKFLHV 27 89********.*************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 17.638 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-6 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.08E-6 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-10 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-8 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 395 aa Download sequence Send to blast |
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG SLSGSDQQRK SNPYGFGVQN 60 NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS 120 IIIEDNEHES PLWKLTCYGH WKNLPCDIVG DISYEELRAA AYDDAKRGLN MQSIVERERN 180 LLNTKLIEFD KLCNPQGALL KPNHSSQNPL PSASQNAFLQ AANNSAAPSL SSFSQLGTSL 240 NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGSRGSQFP ATAHVNVFPS 300 STGFGNTGVM RHETNPFSTL AVSSQIPSAT TGLSPILSDG PTSASNAVGQ STTEVQFLTN 360 MQRDKISGEM SIWLKKIWSP GEIPEEEPPD ALVEL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008224558.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224558.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
TrEMBL | A0A251QQG5 | 0.0 | A0A251QQG5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224558.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4600 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75340.1 | 5e-65 | C3H family protein |