PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008224336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 21958.6 Da PI: 6.4087 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.5e-05 | 26 | 46 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+++F + L +Hi +H XP_008224336.1 26 CRICDRVFMSTQALINHIESH 46 ******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.974 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MRHGGNVHGS NCGPASMPSG STEIACRICD RVFMSTQALI NHIESHIVDD GLTASRLRQL 60 TQQTNTNPPI RSNPVFPLSN PFNQRNPFHD VHNNQIGFAP PPPHHQYPYP QQQLSPYALP 120 RNVNVNVNQG VVGSHYMVMQ SANETAARMA SEEDNLSSDC TMPLLSQLER PLPPVNYELD 180 RLGNIGEASS DNLDLTLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008224336.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224336.1 | 1e-146 | PREDICTED: uncharacterized protein LOC103324080 | ||||
TrEMBL | A0A314ZFQ4 | 1e-117 | A0A314ZFQ4_PRUYE; Uncharacterized protein | ||||
STRING | XP_008224336.1 | 1e-145 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14890 | 8 | 12 |