PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223879.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HB-PHD
Protein Properties Length: 698aa    MW: 79038.7 Da    PI: 9.8252
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223879.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.53.5e-114755181053
                     HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     + +e L ++F +n  ps++ +e L+k+lgL+ ++V+ WF+N R+
  XP_008223879.1 475 KAVEKLRQVFSENELPSRDVKENLSKELGLDPEKVSKWFKNARY 518
                     67899*************************************97 PP
2PHD40.37.2e-14233288151
                     SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C+ +++  +++++lCd +C+++fH+kCl+++l++e++p+g   w+C+ C++k
  XP_008223879.1 233 FCAKCKLNEAfpDNDIILCDgTCNSAFHQKCLDPPLDTENIPRGdqGWFCKFCECK 288
                     699999955455********56*********************999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.52E-15225291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.5E-12229288IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.389231288IPR019787Zinc finger, PHD-finger
SMARTSM002495.8E-9233286IPR001965Zinc finger, PHD-type
PfamPF006283.9E-11233288IPR019787Zinc finger, PHD-finger
CDDcd155048.25E-30233285No hitNo description
PROSITE patternPS013590234285IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.5E-13456517IPR009057Homeodomain-like
PROSITE profilePS5007112.487463523IPR001356Homeobox domain
SMARTSM003892.5E-9465527IPR001356Homeobox domain
SuperFamilySSF466899.41E-11466534IPR009057Homeodomain-like
CDDcd000861.25E-8471527No hitNo description
PfamPF000461.3E-8474518IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MRGLGKKSSL KESGKPRYSN SVAKLISSPK FRKGSKVSHV KKIKPRSKTI IASCLSKKRG  60
ADSIRKGSRN NDTDKKLMSR KGVHKVHDTN SSKKLSSVKL KDEKLSFKDS DKKGENADGE  120
VKLRIKRRRK KKLQKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYSGE GWKGQSREKI  180
KPEKELQRAK KQILKCKLGI RDAIHQLYSL SSVGSMADSV IAADGSVYHE HIFCAKCKLN  240
EAFPDNDIIL CDGTCNSAFH QKCLDPPLDT ENIPRGDQGW FCKFCECKME ILEVVNAHLG  300
TCFSNDCGWQ DVFKEEAAFP DGENSLLNPD EEWPSDDSED DDYNPERNEN SCSFSMGGTE  360
DNASDDELST DVSVGSDEST DGEVVSGRRQ RRRVDYKKLY DEMFGKDGPL HEQISDDEDW  420
GPVKRKRREK ESDAASTLMT LYESERIPDV TPTEVKSKHP PDTQVRRACF RIPRKAVEKL  480
RQVFSENELP SRDVKENLSK ELGLDPEKVS KWFKNARYLA LKTRKEESAT NLHTVTPGIS  540
KESTHENVTE KAADLMASDS DDFLAETVVH SPRNVKKSFR RKHPKSLSSP LRKNQQKGSS  600
CGSPAKRNKD GMELSDNVSL KKLLKERTKE KKANLIAGGG CRVAELEMER LCKAKGRLEN  660
MRQKLLKFQN AKAKKSNKSP LHEQSVIYVP IAELKDKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131KRRRKKK
2127132RRKKKL
3387392RRQRRR
4424429RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223879.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223879.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-155PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLM5XHZ30.0M5XHZ3_PRUPE; Uncharacterized protein
STRINGXP_008223879.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-156pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]