PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008223824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 186aa MW: 21587.5 Da PI: 10.3852 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 36 | 90 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F ++++++ ++++ LA++l+L++rqV vWFqNrRa+ k XP_008223824.1 36 RKKLRLTKEQSTLLEESFTRHSTLNPARKQSLAEQLNLKQRQVEVWFQNRRARTK 90 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113.3 | 1.5e-36 | 36 | 124 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p rK++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+ k+++++l +en+rL+ke +eLr+ XP_008223824.1 36 RKKLRLTKEQSTLLEESFTRHSTLNPARKQSLAEQLNLKQRQVEVWFQNRRARTKLKQTEVDCEFWKKRCESLGDENRRLKKELQELRS 124 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 14 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.21E-18 | 23 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.508 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-15 | 34 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.76E-14 | 36 | 93 | No hit | No description |
Pfam | PF00046 | 7.3E-16 | 36 | 90 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.2E-8 | 92 | 123 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.1E-15 | 92 | 137 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MENRSSLRAM DEDEESERSI GTNNKSIIMN NKNGVRKKLR LTKEQSTLLE ESFTRHSTLN 60 PARKQSLAEQ LNLKQRQVEV WFQNRRARTK LKQTEVDCEF WKKRCESLGD ENRRLKKELQ 120 ELRSFNKNGA SPLYIQIPKA TILSMCPSCE RMVKAHHHDQ AAAKNTEDLN VVRKSNKLQG 180 GFDGTN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 92 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008223824.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008223824.1 | 1e-136 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | P46665 | 1e-51 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A251QUI1 | 1e-126 | A0A251QUI1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008223824.1 | 1e-136 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-54 | homeobox from Arabidopsis thaliana |