PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223533.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 380aa    MW: 41377.5 Da    PI: 6.0488
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223533.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.4e-081858438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + C+ +++  + lfC+ ++ +lC +C +++H        H+
  XP_008223533.1 18 KPCDSCKNSAAALFCRADSAFLCLTCDSKIHAAnklatrHE 58
                    57******99*********************6566776676 PP
2zf-B_box27.37.6e-0960100337
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++C+ +e+ +++  C+ +   lC +C   +H+       H
  XP_008223533.1  60 VWMCEVCEQAPASVTCKADAAALCVTCDADIHSAhplasrH 100
                     689*****************************884444455 PP
3CCT691.2e-23308351144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++
  XP_008223533.1 308 REARVLRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRT 351
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.3E-131562IPR000315B-box-type zinc finger
PfamPF006432.6E-61859IPR000315B-box-type zinc finger
CDDcd000211.21E-81962No hitNo description
PROSITE profilePS5011910.5092062IPR000315B-box-type zinc finger
PROSITE profilePS5011911.2258105IPR000315B-box-type zinc finger
PfamPF006439.0E-760100IPR000315B-box-type zinc finger
CDDcd000217.91E-1061105No hitNo description
SMARTSM003362.4E-763105IPR000315B-box-type zinc finger
PROSITE profilePS5101716.668308350IPR010402CCT domain
PfamPF062038.4E-18308350IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGIQAGGWRA MAGGLVAKPC DSCKNSAAAL FCRADSAFLC LTCDSKIHAA NKLATRHERV  60
WMCEVCEQAP ASVTCKADAA ALCVTCDADI HSAHPLASRH DRVPVEPFFD SAESIIVKSA  120
SSVDSLNFLL PNGAVPSHTK DDENDEASTW LIPNLNFNSK LQMDIAPDII KSSELFLPEM  180
DSLLEFDYPN PIHHDISGSG TDSVVPVQPD PLPPPSLNIN RVSAEQNCFD LDFCRSKLSS  240
SFSYPTQSLS HSVSSSSMEV GVVPDGNSIS DISYPFGRNA SLTVSDPSAQ FSATTANQVA  300
TQLSGLDREA RVLRYREKRK NRKFQKTIRY ASRKAYAETR PRIKGRFAKR TETEIEAVDN  360
IYGSAQGAFI PETYGVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223533.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-117COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLM5XRX00.0M5XRX0_PRUPE; Uncharacterized protein
STRINGXP_008223533.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-107CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]