PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008223488.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 1034aa MW: 114845 Da PI: 7.2265

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008223488.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.7	9.1e-40	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++ v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_008223488.1 147 VCQVEDCKADLSHAKDYHRRHKVCDMHSKATKARVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 224 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.7E-32	144	209	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.761	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.02E-37	146	227	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-28	148	221	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.29E-6	761	921	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-5	802	914	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.07E-6	802	910	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MEAFGGSARN FYGPMVSDLK AVGKKSLEWD LNDCKWDGDL FTASPLNSIP SDFRSRQLFP 60 VQPETPSNAG LSNSSSSGSD DISPGNEKGK RELEKRRRAT FVENEELNNE AGSLNLKLGE 120 QAYPIMEGEV QTGKKTKIVG TTLNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATKAR 180 VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDPVVNG GSLNDERGSS 240 YLLISLLRIL SNMHSNSSDQ TKDQDLLSHL LRSLANLAGT VDGRSISALL PGSQGLLNSG 300 PSVQTAQKIP DTVSNGCEPS RPSVSASKRD DCVNLEDPLR PIRQCPMVPA SDLLQKRISS 360 VDADHRSLQV VSGLQAAKPL PSRDSVPSKS VAPDATMGRM QLNGIDLNNT YDDSQDYLEN 420 LGSSHSPVNP GTVSLGFPLW MQQESQKSSP PQTSGTSDST STQSPSTSSG EGQSRTDRIV 480 FKLFGKDPND LPFVLRSQIL DWLSHSPSDI ESYIRPGCII LTIYLRLEKS TWEELCCHLG 540 SNLKRLLHAA NDPFWTTGWV YTRVQQNVAF TYNGQVVLDT PLPLKSHKNC RISYIKPIAV 600 SLSERAQFVV KGFNLSRSTT RLLCALEGKY LAQETCYDLM DSADTTVEHD EQQCLRFSCS 660 IPNVTGRGFI EVEDHGLSSS FFPFIVAEQE VCSEICMLEG AIEVAETADD IQSEPEKLEA 720 KNLAMDFLHE LGWLLHRSHT KFRLGHMDPN LDLFPFRRFR LLMEFSMDHD WCAVVKKLLG 780 ILFEGTVDAG EHPSIELALL DMSLLHRAVR RKCRSMVELL LRFVPDKGLD KTGSEQKQQV 840 DRDGNNFLFK PDAVGPMGLT PLHVAASTDG CEIILDALTD DPGKVGIEAW KYARDGTGLT 900 PNDYACLRGR YSYLHIVQRK ISKKLESGQV VLDIPGTILD SISKQKQADG HKSAKVASLE 960 TEKIEIKTMQ GHCKLCEMKL AYGNTRSLVY RPAMLSMVAI AAVCVCVALL FKSSPEVVYV 1020 FQPFRWELLK YGPS

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MEAFGGSARN FYGPMVSDLK AVGKKSLEWD LNDCKWDGDL FTASPLNSIP SDFRSRQLFP  60
VQPETPSNAG LSNSSSSGSD DISPGNEKGK RELEKRRRAT FVENEELNNE AGSLNLKLGE  120
QAYPIMEGEV QTGKKTKIVG TTLNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATKAR  180
VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDPVVNG GSLNDERGSS  240
YLLISLLRIL SNMHSNSSDQ TKDQDLLSHL LRSLANLAGT VDGRSISALL PGSQGLLNSG  300
PSVQTAQKIP DTVSNGCEPS RPSVSASKRD DCVNLEDPLR PIRQCPMVPA SDLLQKRISS  360
VDADHRSLQV VSGLQAAKPL PSRDSVPSKS VAPDATMGRM QLNGIDLNNT YDDSQDYLEN  420
LGSSHSPVNP GTVSLGFPLW MQQESQKSSP PQTSGTSDST STQSPSTSSG EGQSRTDRIV  480
FKLFGKDPND LPFVLRSQIL DWLSHSPSDI ESYIRPGCII LTIYLRLEKS TWEELCCHLG  540
SNLKRLLHAA NDPFWTTGWV YTRVQQNVAF TYNGQVVLDT PLPLKSHKNC RISYIKPIAV  600
SLSERAQFVV KGFNLSRSTT RLLCALEGKY LAQETCYDLM DSADTTVEHD EQQCLRFSCS  660
IPNVTGRGFI EVEDHGLSSS FFPFIVAEQE VCSEICMLEG AIEVAETADD IQSEPEKLEA  720
KNLAMDFLHE LGWLLHRSHT KFRLGHMDPN LDLFPFRRFR LLMEFSMDHD WCAVVKKLLG  780
ILFEGTVDAG EHPSIELALL DMSLLHRAVR RKCRSMVELL LRFVPDKGLD KTGSEQKQQV  840
DRDGNNFLFK PDAVGPMGLT PLHVAASTDG CEIILDALTD DPGKVGIEAW KYARDGTGLT  900
PNDYACLRGR YSYLHIVQRK ISKKLESGQV VLDIPGTILD SISKQKQADG HKSAKVASLE  960
TEKIEIKTMQ GHCKLCEMKL AYGNTRSLVY RPAMLSMVAI AAVCVCVALL FKSSPEVVYV  1020
FQPFRWELLK YGPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	147	221	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008223488.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008223488.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
TrEMBL	M5XKZ8	0.0	M5XKZ8_PRUPE; Uncharacterized protein
STRING	XP_008223488.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1