PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223487.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 997aa    MW: 110845 Da    PI: 6.5069
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223487.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.5e-41142219178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C+adls+ak+yhrrhkvC++hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  XP_008223487.1 142 VCQVEDCKADLSNAKDYHRRHKVCDMHSKASTALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 219
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.2E-33137204IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.052140217IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-37141222IPR004333Transcription factor, SBP-box
PfamPF031102.7E-29143216IPR004333Transcription factor, SBP-box
SMARTSM00248150765794IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.5E-7767880IPR020683Ankyrin repeat-containing domain
CDDcd002041.27E-9767879No hitNo description
SuperFamilySSF484031.27E-8767880IPR020683Ankyrin repeat-containing domain
SMARTSM002483.5820850IPR002110Ankyrin repeat
SMARTSM002484200860890IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 997 aa     Download sequence    Send to blast
MEAEFGGKAH SYYGMKAVGK KSFEWDLNDW KWDGDLFTAS PLNSVPSACR SKQLFPVRPE  60
TPSNAGLSNS SSSGSDNISP GNEKGKRELE KRRRAVFVEN EVHDEAGSLN LNLGGQAYPI  120
MEGEVQTGKK TKIVGTTSNC AVCQVEDCKA DLSNAKDYHR RHKVCDMHSK ASTALVGNAM  180
QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NRRRRKTHPD TTANGGSLND ERGSSYLLIS  240
LLRILSNMHS SSSDQTKDQD LLSHLLRSLA NLAGTADGRN ISTLLHGSQG LFNSGTSVQT  300
TKVPDMDDGV NLEDLRPVGQ CSVVPASDML ERRISSVDDP GSLQVLSGLQ ATEPLPSRDS  360
SESKSVTPEA TSRRFQLNGI DLNNTYDDSQ EYLENLGNSH VPASPGTASW LQRDSHKSSP  420
PQTSGNSDLT STQSPSSSSG EAQSRTDRIV FKLFGKDPND LPFILRSQIL DWLSHSPTDI  480
ESYIRPGCII LTIYLRLENS TWEELCCHLG SSLKTLLDAA DDPFWRTGWV YTRVQHFVTF  540
TYNGQVVLDT PLPLKSDKSC RISYIKPIAV SVSERAQFVV KGFNLSHSAT RLLCALEGKY  600
LVQETCYDMM DGVHTTVEHD ELQCLKFSCS IPDVTGRGFI EVEDHGLSSS FFPFIVAEQE  660
VCSEICMLED EIEVPESADA EKLEAKNQAL DFIHELGWLL HRSRAKFRLG HSDLNLDLFP  720
FSRFRLLMEF SIEHDWCVVV KKLLGILFEG TVDAGEHTSV EFALLDMSLL HRAVQRNCRS  780
MVEFLLKFIP NQGLTGSEQK QQVDRDGNSF LFKPDAVGPM GLTPLHVAAS ADGYEHVLDA  840
LTDDPGKLGI EAWKNARDST GLTPYDYACL QSRYSYVHLV QRKISKTLES GQVVLDIPGV  900
ILDRNGKQKQ SEAYKPSRVA SLETEKIEMK VILRHCKLCA QKPAYGNTRS LVYRPAMLSM  960
VAVAAVCVCV ALLFKSTPEV LFVFQPFRWE LLKYGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-301422161084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223098e-65KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223487.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLM5XKY40.0M5XKY4_PRUPE; Uncharacterized protein
STRINGXP_008223487.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]