PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008223392.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 362aa MW: 39169.1 Da PI: 8.8238

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008223392.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	79	139	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+ XP_008223392.1 79 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 139 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	69	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-33	82	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MVFSSIPVYL DPPNWHQQPN HHPLGSTTTG NENPLELPPL PLPPLTHVGG QGSTGGGGPG 60 SIRPSSMSDR ARMAKIPQPE TALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG 120 GALRNVPVGG GCRRNKKSKS NSSSSSRSKS PAATSTDHIQ TGSNSSDHHM IDTHLSQLPP 180 PTHQSLPFLA STIQSLGRYG GAGNMGLNFN EIQQGQTDHH HHMGFQFHQI GGNNINNLNG 240 GILGGDNQWR NLNLQQIPFL GGSGFDSSPS TGLYQFQTGD QGVDHHHQAP TDPMAANNSR 300 VNNTGDHLPP PVKVEDNRGL SLTRPSLGTN ISENNNNQFW GGNLNAWTDL SGLNSSSTSH 360 LL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MVFSSIPVYL DPPNWHQQPN HHPLGSTTTG NENPLELPPL PLPPLTHVGG QGSTGGGGPG  60
SIRPSSMSDR ARMAKIPQPE TALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG  120
GALRNVPVGG GCRRNKKSKS NSSSSSRSKS PAATSTDHIQ TGSNSSDHHM IDTHLSQLPP  180
PTHQSLPFLA STIQSLGRYG GAGNMGLNFN EIQQGQTDHH HHMGFQFHQI GGNNINNLNG  240
GILGGDNQWR NLNLQQIPFL GGSGFDSSPS TGLYQFQTGD QGVDHHHQAP TDPMAANNSR  300
VNNTGDHLPP PVKVEDNRGL SLTRPSLGTN ISENNNNQFW GGNLNAWTDL SGLNSSSTSH  360
LL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008223392.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008223392.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
TrEMBL	A0A251NPI5	0.0	A0A251NPI5_PRUPE; Uncharacterized protein
STRING	XP_008223392.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-38	DNA binding with one finger 2.4